miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 5' -60.4 NC_005284.1 + 53785 0.76 0.09173
Target:  5'- aUGCCG-GCUGCuGCgGCGAGCG-CAUCu -3'
miRNA:   3'- -ACGGCuCGGCGuCG-CGCUCGCuGUAG- -5'
24820 5' -60.4 NC_005284.1 + 53378 0.67 0.380988
Target:  5'- cUGCU-AGCUGU-GCGCGgaugccAGCGACGUCg -3'
miRNA:   3'- -ACGGcUCGGCGuCGCGC------UCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 49719 0.66 0.41671
Target:  5'- uUGUCGAucggcGUCGCAuuCGCGAGCGugAUg -3'
miRNA:   3'- -ACGGCU-----CGGCGUc-GCGCUCGCugUAg -5'
24820 5' -60.4 NC_005284.1 + 49372 0.67 0.389725
Target:  5'- aGCUucGCCG-AGCGCGAGCuGGCGc- -3'
miRNA:   3'- aCGGcuCGGCgUCGCGCUCG-CUGUag -5'
24820 5' -60.4 NC_005284.1 + 47288 0.71 0.206333
Target:  5'- gGCCGucGCCGCGugaucaacgcGCGCGAGCuGAacCGUCa -3'
miRNA:   3'- aCGGCu-CGGCGU----------CGCGCUCG-CU--GUAG- -5'
24820 5' -60.4 NC_005284.1 + 46682 0.66 0.407589
Target:  5'- gGCCGAacGCCGC--CGCGAccGCGguuGCAUCg -3'
miRNA:   3'- aCGGCU--CGGCGucGCGCU--CGC---UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 46575 0.69 0.279707
Target:  5'- uUGCCGAGCaugGCGGCGC-AGUGgGCAa- -3'
miRNA:   3'- -ACGGCUCGg--CGUCGCGcUCGC-UGUag -5'
24820 5' -60.4 NC_005284.1 + 46547 1.09 0.000256
Target:  5'- uUGCCGAGCCGCAGCGCGAGCGACAUCa -3'
miRNA:   3'- -ACGGCUCGGCGUCGCGCUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 46504 0.67 0.347369
Target:  5'- gGCCGAcGCCGCacgggacggauGGUGCGaAGgGAgGUCc -3'
miRNA:   3'- aCGGCU-CGGCG-----------UCGCGC-UCgCUgUAG- -5'
24820 5' -60.4 NC_005284.1 + 45901 0.71 0.201036
Target:  5'- uUGCCGuGGUCGC-GCGCGAuGCGcagcACGUCg -3'
miRNA:   3'- -ACGGC-UCGGCGuCGCGCU-CGC----UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 45628 0.69 0.266172
Target:  5'- cGCCGAacucuugcccauGCCGC-GCGCGAuagcauccGCGACAc- -3'
miRNA:   3'- aCGGCU------------CGGCGuCGCGCU--------CGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 45413 0.72 0.185849
Target:  5'- gUGUCGcAGUCGCGGCcgGCGAcgauauucGCGGCGUCg -3'
miRNA:   3'- -ACGGC-UCGGCGUCG--CGCU--------CGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 45134 0.71 0.206333
Target:  5'- cGUCGAGCUGaugggcaaGGCGUGgucgacgcacGGCGACGUCg -3'
miRNA:   3'- aCGGCUCGGCg-------UCGCGC----------UCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 44907 0.69 0.272872
Target:  5'- cGCUGAGCUccugcuguGCGGCugccgucucGCGAGCGAUgAUCg -3'
miRNA:   3'- aCGGCUCGG--------CGUCG---------CGCUCGCUG-UAG- -5'
24820 5' -60.4 NC_005284.1 + 44864 0.8 0.046609
Target:  5'- cGCCGuacGCCGCugcugcgcgAGCGCGAGCGACGcuUCg -3'
miRNA:   3'- aCGGCu--CGGCG---------UCGCGCUCGCUGU--AG- -5'
24820 5' -60.4 NC_005284.1 + 44631 0.69 0.285975
Target:  5'- -aCCGAGCgcaucaucgugccCGUAcGCGCGAGCGcCGUCu -3'
miRNA:   3'- acGGCUCG-------------GCGU-CGCGCUCGCuGUAG- -5'
24820 5' -60.4 NC_005284.1 + 43623 0.83 0.024791
Target:  5'- cGCgGcGGCCGCGGCGCGAGCuGCGUCa -3'
miRNA:   3'- aCGgC-UCGGCGUCGCGCUCGcUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 43536 0.68 0.331373
Target:  5'- cGCgCGAGCCGCuGcCGCGuuGGuCGACAc- -3'
miRNA:   3'- aCG-GCUCGGCGuC-GCGC--UC-GCUGUag -5'
24820 5' -60.4 NC_005284.1 + 42646 0.68 0.330588
Target:  5'- aGCCGcgcuuGCCGCaccaccgAGCGCGccgaCGGCAUCa -3'
miRNA:   3'- aCGGCu----CGGCG-------UCGCGCuc--GCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 41962 0.71 0.21175
Target:  5'- cGaaGAGuCCGCgGGCGCGAagcgGCGGCGUCc -3'
miRNA:   3'- aCggCUC-GGCG-UCGCGCU----CGCUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.