miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 5' -60.4 NC_005284.1 + 24920 0.66 0.444807
Target:  5'- cGCCGGcGCCGaccauCGCGAGauGCGUCg -3'
miRNA:   3'- aCGGCU-CGGCguc--GCGCUCgcUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 22130 0.68 0.315926
Target:  5'- cGCCGAugcgggagagGCgGCAGCGUG-GCGcUAUCg -3'
miRNA:   3'- aCGGCU----------CGgCGUCGCGCuCGCuGUAG- -5'
24820 5' -60.4 NC_005284.1 + 33171 0.68 0.308408
Target:  5'- cGUCGAG-CGCGGCGC--GCGAgAUCu -3'
miRNA:   3'- aCGGCUCgGCGUCGCGcuCGCUgUAG- -5'
24820 5' -60.4 NC_005284.1 + 46547 1.09 0.000256
Target:  5'- uUGCCGAGCCGCAGCGCGAGCGACAUCa -3'
miRNA:   3'- -ACGGCUCGGCGUCGCGCUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 7171 0.66 0.407589
Target:  5'- cGCa-AGCUuCAGCGCGuGCGACAc- -3'
miRNA:   3'- aCGgcUCGGcGUCGCGCuCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 36304 0.67 0.389725
Target:  5'- cGCCGAGCgCGUucucGGCGCGcacccgcGCGAgGUa -3'
miRNA:   3'- aCGGCUCG-GCG----UCGCGCu------CGCUgUAg -5'
24820 5' -60.4 NC_005284.1 + 5705 0.67 0.389725
Target:  5'- aUGCCGAGuuGCuuacCGCGgucAGUGACAc- -3'
miRNA:   3'- -ACGGCUCggCGuc--GCGC---UCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 37868 0.67 0.389725
Target:  5'- aGCuCGAuCCGaugcgAGCGCucauaGAGCGACGUCg -3'
miRNA:   3'- aCG-GCUcGGCg----UCGCG-----CUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 21801 0.67 0.347369
Target:  5'- cGCCc-GCUGCGGaGCGAGUGACcgCc -3'
miRNA:   3'- aCGGcuCGGCGUCgCGCUCGCUGuaG- -5'
24820 5' -60.4 NC_005284.1 + 42646 0.68 0.330588
Target:  5'- aGCCGcgcuuGCCGCaccaccgAGCGCGccgaCGGCAUCa -3'
miRNA:   3'- aCGGCu----CGGCG-------UCGCGCuc--GCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 39430 0.68 0.331373
Target:  5'- aUGCCGAucgagccaucgGCCuGCAcGC-CGAGCGACAcgaUCa -3'
miRNA:   3'- -ACGGCU-----------CGG-CGU-CGcGCUCGCUGU---AG- -5'
24820 5' -60.4 NC_005284.1 + 33498 0.67 0.36391
Target:  5'- cGCCGuugugcuGCCGCAGUagGCGcGCGGCc-- -3'
miRNA:   3'- aCGGCu------CGGCGUCG--CGCuCGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 49719 0.66 0.41671
Target:  5'- uUGUCGAucggcGUCGCAuuCGCGAGCGugAUg -3'
miRNA:   3'- -ACGGCU-----CGGCGUc-GCGCUCGCugUAg -5'
24820 5' -60.4 NC_005284.1 + 33127 0.68 0.331373
Target:  5'- cGCCGAcGCgGCGGCaucguGCGcGGCGAUcgCa -3'
miRNA:   3'- aCGGCU-CGgCGUCG-----CGC-UCGCUGuaG- -5'
24820 5' -60.4 NC_005284.1 + 46682 0.66 0.407589
Target:  5'- gGCCGAacGCCGC--CGCGAccGCGguuGCAUCg -3'
miRNA:   3'- aCGGCU--CGGCGucGCGCU--CGC---UGUAG- -5'
24820 5' -60.4 NC_005284.1 + 20962 0.67 0.372382
Target:  5'- aGUCGAGgCGCAacucuccugcGUGCGGGCGAUu-- -3'
miRNA:   3'- aCGGCUCgGCGU----------CGCGCUCGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 43536 0.68 0.331373
Target:  5'- cGCgCGAGCCGCuGcCGCGuuGGuCGACAc- -3'
miRNA:   3'- aCG-GCUCGGCGuC-GCGC--UC-GCUGUag -5'
24820 5' -60.4 NC_005284.1 + 20737 0.68 0.315926
Target:  5'- -uCCGAGCCGCGaaGCcAGCGACgAUCc -3'
miRNA:   3'- acGGCUCGGCGUcgCGcUCGCUG-UAG- -5'
24820 5' -60.4 NC_005284.1 + 36892 0.66 0.407589
Target:  5'- cGCC-AGCCGCuGCGCGGauGCGcCcgCc -3'
miRNA:   3'- aCGGcUCGGCGuCGCGCU--CGCuGuaG- -5'
24820 5' -60.4 NC_005284.1 + 21321 0.67 0.389725
Target:  5'- cGCCG-GCCGaCGGCGCGuguaagcacuGCGG-AUCg -3'
miRNA:   3'- aCGGCuCGGC-GUCGCGCu---------CGCUgUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.