Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24820 | 5' | -60.4 | NC_005284.1 | + | 21558 | 0.69 | 0.293067 |
Target: 5'- uUGCCGAcgagcagGCCGCGcgggcguucgacGCGC-AGCGGCAUg -3' miRNA: 3'- -ACGGCU-------CGGCGU------------CGCGcUCGCUGUAg -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 21733 | 0.66 | 0.398593 |
Target: 5'- aGCagaGAGUCGCAGCcuGCGGGCuGC-UCu -3' miRNA: 3'- aCGg--CUCGGCGUCG--CGCUCGcUGuAG- -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 21801 | 0.67 | 0.347369 |
Target: 5'- cGCCc-GCUGCGGaGCGAGUGACcgCc -3' miRNA: 3'- aCGGcuCGGCGUCgCGCUCGCUGuaG- -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 21827 | 0.66 | 0.41671 |
Target: 5'- gUGcCCGGcgcuuccagcGCCGcCGGCGUGGGCGAUg-- -3' miRNA: 3'- -AC-GGCU----------CGGC-GUCGCGCUCGCUGuag -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 22130 | 0.68 | 0.315926 |
Target: 5'- cGCCGAugcgggagagGCgGCAGCGUG-GCGcUAUCg -3' miRNA: 3'- aCGGCU----------CGgCGUCGCGCuCGCuGUAG- -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 22747 | 0.69 | 0.293067 |
Target: 5'- gGCCGAGCgGCugcggucgaucaaGGgGCGcGCGAuCGUCa -3' miRNA: 3'- aCGGCUCGgCG-------------UCgCGCuCGCU-GUAG- -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 22930 | 0.66 | 0.435322 |
Target: 5'- aGUCGGGCUGUucugaucgauuGGCGCGcGCGuugcuCGUCu -3' miRNA: 3'- aCGGCUCGGCG-----------UCGCGCuCGCu----GUAG- -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 23298 | 0.71 | 0.205798 |
Target: 5'- aUGCCGAGgCGCGcaauGCGCGcuuuuccGGCGGCAc- -3' miRNA: 3'- -ACGGCUCgGCGU----CGCGC-------UCGCUGUag -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 23574 | 0.71 | 0.21175 |
Target: 5'- aUGCC-AGCCGgAGCGgguCGAGCGGuuCAUCg -3' miRNA: 3'- -ACGGcUCGGCgUCGC---GCUCGCU--GUAG- -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 24920 | 0.66 | 0.444807 |
Target: 5'- cGCCGGcGCCGaccauCGCGAGauGCGUCg -3' miRNA: 3'- aCGGCU-CGGCguc--GCGCUCgcUGUAG- -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 26789 | 0.75 | 0.102496 |
Target: 5'- cGCCcgcgggauaGAGCUGCAacaucGCGCGAGCGGCuUCa -3' miRNA: 3'- aCGG---------CUCGGCGU-----CGCGCUCGCUGuAG- -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 27993 | 0.71 | 0.21729 |
Target: 5'- cGCgCGAuGuuGCAGCucuaucccGCGGGCGACAUg -3' miRNA: 3'- aCG-GCU-CggCGUCG--------CGCUCGCUGUAg -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 29736 | 0.71 | 0.190796 |
Target: 5'- cGUCGGGgCGCcgaacagcaccGGCGCGAGCGggauacGCAUCu -3' miRNA: 3'- aCGGCUCgGCG-----------UCGCGCUCGC------UGUAG- -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 31474 | 0.67 | 0.380988 |
Target: 5'- cGCCGuGCCGCcggaaaAGCGCGcauuGCGcGCcUCg -3' miRNA: 3'- aCGGCuCGGCG------UCGCGCu---CGC-UGuAG- -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 32789 | 0.66 | 0.425026 |
Target: 5'- cUGCCGgugcgucGGCCugcGCGGguUGCgGGGCGGCGUCg -3' miRNA: 3'- -ACGGC-------UCGG---CGUC--GCG-CUCGCUGUAG- -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 33127 | 0.68 | 0.331373 |
Target: 5'- cGCCGAcGCgGCGGCaucguGCGcGGCGAUcgCa -3' miRNA: 3'- aCGGCU-CGgCGUCG-----CGC-UCGCUGuaG- -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 33171 | 0.68 | 0.308408 |
Target: 5'- cGUCGAG-CGCGGCGC--GCGAgAUCu -3' miRNA: 3'- aCGGCUCgGCGUCGCGcuCGCUgUAG- -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 33498 | 0.67 | 0.36391 |
Target: 5'- cGCCGuugugcuGCCGCAGUagGCGcGCGGCc-- -3' miRNA: 3'- aCGGCu------CGGCGUCG--CGCuCGCUGuag -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 33630 | 0.72 | 0.181016 |
Target: 5'- uUGCuCGAGCCGC-GCGCG-GCauuCAUCa -3' miRNA: 3'- -ACG-GCUCGGCGuCGCGCuCGcu-GUAG- -5' |
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24820 | 5' | -60.4 | NC_005284.1 | + | 36304 | 0.67 | 0.389725 |
Target: 5'- cGCCGAGCgCGUucucGGCGCGcacccgcGCGAgGUa -3' miRNA: 3'- aCGGCUCG-GCG----UCGCGCu------CGCUgUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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