miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24823 3' -59.4 NC_005284.1 + 53501 0.66 0.518044
Target:  5'- cGGuUCGCCGCGCGgggcuuuuucauUUCCGCgcccggagUUGCUa-- -3'
miRNA:   3'- -CC-AGCGGCGCGC------------AAGGCG--------AGCGAgug -5'
24823 3' -59.4 NC_005284.1 + 31220 0.66 0.507902
Target:  5'- -aUCGCCGCGaCGUUgCCGaugCGCUUc- -3'
miRNA:   3'- ccAGCGGCGC-GCAA-GGCga-GCGAGug -5'
24823 3' -59.4 NC_005284.1 + 33441 0.66 0.497845
Target:  5'- --aCGCCuGCGCGguagucgaUCCGCagUGCUUACa -3'
miRNA:   3'- ccaGCGG-CGCGCa-------AGGCGa-GCGAGUG- -5'
24823 3' -59.4 NC_005284.1 + 15845 0.66 0.487878
Target:  5'- -cUCGgCGUGCGUUUCGgaCGCauUCACc -3'
miRNA:   3'- ccAGCgGCGCGCAAGGCgaGCG--AGUG- -5'
24823 3' -59.4 NC_005284.1 + 40284 0.66 0.487878
Target:  5'- uGGcUGCUGCGCGUcggaugUCUGCUCGaagccCGCg -3'
miRNA:   3'- -CCaGCGGCGCGCA------AGGCGAGCga---GUG- -5'
24823 3' -59.4 NC_005284.1 + 33222 0.67 0.478006
Target:  5'- cGUCGaacgcCCGCGCGgcCUGCUCGUcgGCa -3'
miRNA:   3'- cCAGC-----GGCGCGCaaGGCGAGCGagUG- -5'
24823 3' -59.4 NC_005284.1 + 31010 0.67 0.458564
Target:  5'- --cCGCCGUGCGUgcggaaguugCCGgUUgGCUCGCu -3'
miRNA:   3'- ccaGCGGCGCGCAa---------GGC-GAgCGAGUG- -5'
24823 3' -59.4 NC_005284.1 + 14597 0.67 0.458564
Target:  5'- cGUCGgCGCgaaaGUGUUCCGgCgccgaaCGCUCGCg -3'
miRNA:   3'- cCAGCgGCG----CGCAAGGC-Ga-----GCGAGUG- -5'
24823 3' -59.4 NC_005284.1 + 3104 0.67 0.457603
Target:  5'- --cUGCCGCugguaucGCGUUCCGC-CGUUUAUg -3'
miRNA:   3'- ccaGCGGCG-------CGCAAGGCGaGCGAGUG- -5'
24823 3' -59.4 NC_005284.1 + 40700 0.67 0.448053
Target:  5'- -cUCGCCGaGCaGUUCCGggaaaucccaccaCUCGUUCGCg -3'
miRNA:   3'- ccAGCGGCgCG-CAAGGC-------------GAGCGAGUG- -5'
24823 3' -59.4 NC_005284.1 + 6422 0.67 0.439553
Target:  5'- cGUCGUCGUGCGaauggUCCGCaagUGCcagCGCg -3'
miRNA:   3'- cCAGCGGCGCGCa----AGGCGa--GCGa--GUG- -5'
24823 3' -59.4 NC_005284.1 + 6268 0.67 0.427439
Target:  5'- cGGUauUCGCGCGUauUCCcacgcccgcccuucGaCUCGCUCACg -3'
miRNA:   3'- -CCAgcGGCGCGCA--AGG--------------C-GAGCGAGUG- -5'
24823 3' -59.4 NC_005284.1 + 30250 0.68 0.420998
Target:  5'- aGUCgGCCGUcgaGCGggCgCGUUCGUUCGCu -3'
miRNA:   3'- cCAG-CGGCG---CGCaaG-GCGAGCGAGUG- -5'
24823 3' -59.4 NC_005284.1 + 15806 0.68 0.4119
Target:  5'- cGUCGCCaGCGCGcagcCCGCggaucagcaUCGCgCACg -3'
miRNA:   3'- cCAGCGG-CGCGCaa--GGCG---------AGCGaGUG- -5'
24823 3' -59.4 NC_005284.1 + 3532 0.68 0.394075
Target:  5'- -uUCuUCGCGCGUg--GCUCGCUCGCc -3'
miRNA:   3'- ccAGcGGCGCGCAaggCGAGCGAGUG- -5'
24823 3' -59.4 NC_005284.1 + 41814 0.68 0.385351
Target:  5'- uGUCGCCGCcacUUCCGCUgggugGCUCGCc -3'
miRNA:   3'- cCAGCGGCGcgcAAGGCGAg----CGAGUG- -5'
24823 3' -59.4 NC_005284.1 + 23443 0.68 0.376756
Target:  5'- --cCGacagCGCGUGUUCUGCgcgUCGCUCGCc -3'
miRNA:   3'- ccaGCg---GCGCGCAAGGCG---AGCGAGUG- -5'
24823 3' -59.4 NC_005284.1 + 12362 0.69 0.368291
Target:  5'- -uUCGCCGCGgGUgg-GCUCGUUgGCg -3'
miRNA:   3'- ccAGCGGCGCgCAaggCGAGCGAgUG- -5'
24823 3' -59.4 NC_005284.1 + 9638 0.69 0.355022
Target:  5'- cGUCGCCGUGCGUcgaCCacgccuugcccaucaGCUCGacgaUCGCa -3'
miRNA:   3'- cCAGCGGCGCGCAa--GG---------------CGAGCg---AGUG- -5'
24823 3' -59.4 NC_005284.1 + 28458 0.69 0.355022
Target:  5'- --gUGCCGCGCuGaagaauguccaugcuUUCCGCUCGCaCGCg -3'
miRNA:   3'- ccaGCGGCGCG-C---------------AAGGCGAGCGaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.