Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24823 | 3' | -59.4 | NC_005284.1 | + | 53501 | 0.66 | 0.518044 |
Target: 5'- cGGuUCGCCGCGCGgggcuuuuucauUUCCGCgcccggagUUGCUa-- -3' miRNA: 3'- -CC-AGCGGCGCGC------------AAGGCG--------AGCGAgug -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 46897 | 0.72 | 0.238751 |
Target: 5'- cGGUCGCCGa-CG-UCgGCUCGCgCACu -3' miRNA: 3'- -CCAGCGGCgcGCaAGgCGAGCGaGUG- -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 44719 | 1.12 | 0.00027 |
Target: 5'- cGGUCGCCGCGCGUUCCGCUCGCUCACg -3' miRNA: 3'- -CCAGCGGCGCGCAAGGCGAGCGAGUG- -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 44675 | 0.7 | 0.312765 |
Target: 5'- cGUCGCCGCGC-UUUCGgUCGC-CGu -3' miRNA: 3'- cCAGCGGCGCGcAAGGCgAGCGaGUg -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 43531 | 0.74 | 0.166317 |
Target: 5'- -uUCGCCGCGCGagCCGCU-GC-CGCg -3' miRNA: 3'- ccAGCGGCGCGCaaGGCGAgCGaGUG- -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 41814 | 0.68 | 0.385351 |
Target: 5'- uGUCGCCGCcacUUCCGCUgggugGCUCGCc -3' miRNA: 3'- cCAGCGGCGcgcAAGGCGAg----CGAGUG- -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 40700 | 0.67 | 0.448053 |
Target: 5'- -cUCGCCGaGCaGUUCCGggaaaucccaccaCUCGUUCGCg -3' miRNA: 3'- ccAGCGGCgCG-CAAGGC-------------GAGCGAGUG- -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 40284 | 0.66 | 0.487878 |
Target: 5'- uGGcUGCUGCGCGUcggaugUCUGCUCGaagccCGCg -3' miRNA: 3'- -CCaGCGGCGCGCA------AGGCGAGCga---GUG- -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 37801 | 0.69 | 0.335756 |
Target: 5'- cGUCGCCguguGCGCGUUCgGCgugaUGCggcgCACg -3' miRNA: 3'- cCAGCGG----CGCGCAAGgCGa---GCGa---GUG- -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 36658 | 0.71 | 0.251028 |
Target: 5'- cGUCGUCGuCGCuUUCCuGCaCGCUCACa -3' miRNA: 3'- cCAGCGGC-GCGcAAGG-CGaGCGAGUG- -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 33441 | 0.66 | 0.497845 |
Target: 5'- --aCGCCuGCGCGguagucgaUCCGCagUGCUUACa -3' miRNA: 3'- ccaGCGG-CGCGCa-------AGGCGa-GCGAGUG- -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 33222 | 0.67 | 0.478006 |
Target: 5'- cGUCGaacgcCCGCGCGgcCUGCUCGUcgGCa -3' miRNA: 3'- cCAGC-----GGCGCGCaaGGCGAGCGagUG- -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 32884 | 0.7 | 0.304639 |
Target: 5'- cGUCGCCGgcgacgccgaaaaCGCGUUCCGCaacCGCU-GCg -3' miRNA: 3'- cCAGCGGC-------------GCGCAAGGCGa--GCGAgUG- -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 31220 | 0.66 | 0.507902 |
Target: 5'- -aUCGCCGCGaCGUUgCCGaugCGCUUc- -3' miRNA: 3'- ccAGCGGCGC-GCAA-GGCga-GCGAGug -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 31010 | 0.67 | 0.458564 |
Target: 5'- --cCGCCGUGCGUgcggaaguugCCGgUUgGCUCGCu -3' miRNA: 3'- ccaGCGGCGCGCAa---------GGC-GAgCGAGUG- -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 30250 | 0.68 | 0.420998 |
Target: 5'- aGUCgGCCGUcgaGCGggCgCGUUCGUUCGCu -3' miRNA: 3'- cCAG-CGGCG---CGCaaG-GCGAGCGAGUG- -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 28458 | 0.69 | 0.355022 |
Target: 5'- --gUGCCGCGCuGaagaauguccaugcuUUCCGCUCGCaCGCg -3' miRNA: 3'- ccaGCGGCGCG-C---------------AAGGCGAGCGaGUG- -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 23909 | 0.7 | 0.290987 |
Target: 5'- cGGUCGCUGCGCGaccagUgCGCU-GC-CGCa -3' miRNA: 3'- -CCAGCGGCGCGCa----AgGCGAgCGaGUG- -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 23443 | 0.68 | 0.376756 |
Target: 5'- --cCGacagCGCGUGUUCUGCgcgUCGCUCGCc -3' miRNA: 3'- ccaGCg---GCGCGCAAGGCG---AGCGAGUG- -5' |
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24823 | 3' | -59.4 | NC_005284.1 | + | 23172 | 0.83 | 0.035322 |
Target: 5'- cGUCGCgGCGCGUUCCGCUCGUg--- -3' miRNA: 3'- cCAGCGgCGCGCAAGGCGAGCGagug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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