miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24824 3' -53.8 NC_005284.1 + 51132 0.66 0.835081
Target:  5'- gCCAcAAUUUCCuuauAGCUGUCGACCa -3'
miRNA:   3'- -GGUcUUAAGGGccauUCGGCGGCUGG- -5'
24824 3' -53.8 NC_005284.1 + 16643 0.66 0.835081
Target:  5'- gCAGGAUcaggacuacaUCUCGGguuuuccGGCCGUCGAgCg -3'
miRNA:   3'- gGUCUUA----------AGGGCCau-----UCGGCGGCUgG- -5'
24824 3' -53.8 NC_005284.1 + 49815 0.66 0.834194
Target:  5'- uUCAGAAUuuggccuUCCuCGGUGAGuuGaagcCCGuACCg -3'
miRNA:   3'- -GGUCUUA-------AGG-GCCAUUCggC----GGC-UGG- -5'
24824 3' -53.8 NC_005284.1 + 15934 0.66 0.826116
Target:  5'- uCCGGcGUUCCUGacGUcGGCgcgcgaCGCCGGCCc -3'
miRNA:   3'- -GGUCuUAAGGGC--CAuUCG------GCGGCUGG- -5'
24824 3' -53.8 NC_005284.1 + 15268 0.66 0.826116
Target:  5'- ------aUCCCGGcgcaucGGCacaGCCGACCg -3'
miRNA:   3'- ggucuuaAGGGCCau----UCGg--CGGCUGG- -5'
24824 3' -53.8 NC_005284.1 + 7126 0.66 0.816949
Target:  5'- uUCAGGAUcgguUCUCGGUcgGAGgUGUCGACg -3'
miRNA:   3'- -GGUCUUA----AGGGCCA--UUCgGCGGCUGg -5'
24824 3' -53.8 NC_005284.1 + 35799 0.66 0.816022
Target:  5'- gCCAGcAUUgagccuuucgucgCCCGcGUAGaucguugcGUCGCCGGCCa -3'
miRNA:   3'- -GGUCuUAA-------------GGGC-CAUU--------CGGCGGCUGG- -5'
24824 3' -53.8 NC_005284.1 + 21822 0.66 0.815092
Target:  5'- aCGGcGUgCCCGGcgcuuccagcGCCGCCGGCg -3'
miRNA:   3'- gGUCuUAaGGGCCauu-------CGGCGGCUGg -5'
24824 3' -53.8 NC_005284.1 + 54686 0.66 0.800928
Target:  5'- aCCGGGAuUUCCCGcagcgauuuuccguGCCGUCGGCUu -3'
miRNA:   3'- -GGUCUU-AAGGGCcauu----------CGGCGGCUGG- -5'
24824 3' -53.8 NC_005284.1 + 18819 0.67 0.792238
Target:  5'- gCCGuGGUUCCCGGcgaagGGGCCgggcgugcaggggcaGCCGAgCa -3'
miRNA:   3'- -GGUcUUAAGGGCCa----UUCGG---------------CGGCUgG- -5'
24824 3' -53.8 NC_005284.1 + 52737 0.67 0.788333
Target:  5'- aCGGggUggCCGGUGuggcuaAGCaGCCGGCa -3'
miRNA:   3'- gGUCuuAagGGCCAU------UCGgCGGCUGg -5'
24824 3' -53.8 NC_005284.1 + 36247 0.67 0.788333
Target:  5'- gCGGAGUgguuuUCCCGGUcAGUugcguaucgaCGCCGuacGCCg -3'
miRNA:   3'- gGUCUUA-----AGGGCCAuUCG----------GCGGC---UGG- -5'
24824 3' -53.8 NC_005284.1 + 5439 0.67 0.787352
Target:  5'- uCCGGAAUcguuugugaCCGGUGcauuagucgagcaAGCCGgCGGCUg -3'
miRNA:   3'- -GGUCUUAag-------GGCCAU-------------UCGGCgGCUGG- -5'
24824 3' -53.8 NC_005284.1 + 5346 0.67 0.778457
Target:  5'- -aAGAGUggCCGGUcgAGGUCGCCGGa- -3'
miRNA:   3'- ggUCUUAagGGCCA--UUCGGCGGCUgg -5'
24824 3' -53.8 NC_005284.1 + 53078 0.67 0.757241
Target:  5'- cCCAGAA-UCgCGGcgcaacgcagaagUAAuGCCGCCGcCCg -3'
miRNA:   3'- -GGUCUUaAGgGCC-------------AUU-CGGCGGCuGG- -5'
24824 3' -53.8 NC_005284.1 + 37831 0.67 0.747971
Target:  5'- gCCGGAAUgugcguggCUauggGGUGAGUCGUCGugCu -3'
miRNA:   3'- -GGUCUUAa-------GGg---CCAUUCGGCGGCugG- -5'
24824 3' -53.8 NC_005284.1 + 112 0.68 0.716435
Target:  5'- gCgGGAAaUCCCGGUAAacGCgCGCUGAa- -3'
miRNA:   3'- -GgUCUUaAGGGCCAUU--CG-GCGGCUgg -5'
24824 3' -53.8 NC_005284.1 + 48995 0.68 0.716435
Target:  5'- aCGGGgcuGUUCCCGGUGaagucagacAGCaCGgCGACg -3'
miRNA:   3'- gGUCU---UAAGGGCCAU---------UCG-GCgGCUGg -5'
24824 3' -53.8 NC_005284.1 + 41157 0.68 0.705743
Target:  5'- gCCAGAGauagCCgaGGUAuuuuCCGUCGACCg -3'
miRNA:   3'- -GGUCUUaa--GGg-CCAUuc--GGCGGCUGG- -5'
24824 3' -53.8 NC_005284.1 + 18244 0.68 0.684155
Target:  5'- aUCAcGAucGUUCCgccauCGGUGcAGCCGCCG-CCg -3'
miRNA:   3'- -GGU-CU--UAAGG-----GCCAU-UCGGCGGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.