miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24824 3' -53.8 NC_005284.1 + 44583 1.15 0.000689
Target:  5'- gCCAGAAUUCCCGGUAAGCCGCCGACCg -3'
miRNA:   3'- -GGUCUUAAGGGCCAUUCGGCGGCUGG- -5'
24824 3' -53.8 NC_005284.1 + 24100 0.73 0.411955
Target:  5'- gCAGAGcgCgUCGGcaagaAAGCCGCCGGCCg -3'
miRNA:   3'- gGUCUUaaG-GGCCa----UUCGGCGGCUGG- -5'
24824 3' -53.8 NC_005284.1 + 47248 0.72 0.457084
Target:  5'- gCAGAAUguuuugCCCuucgucguucgacuGGUAAuuGCCGUCGACCg -3'
miRNA:   3'- gGUCUUAa-----GGG--------------CCAUU--CGGCGGCUGG- -5'
24824 3' -53.8 NC_005284.1 + 49313 0.71 0.510974
Target:  5'- gCAGAAc-CCCGaucAGCCGCCGGCUu -3'
miRNA:   3'- gGUCUUaaGGGCcauUCGGCGGCUGG- -5'
24824 3' -53.8 NC_005284.1 + 14821 0.71 0.542627
Target:  5'- uCCAGuggaaUCgaaaCGG-AAGCUGCCGACCg -3'
miRNA:   3'- -GGUCuua--AGg---GCCaUUCGGCGGCUGG- -5'
24824 3' -53.8 NC_005284.1 + 31073 0.69 0.673281
Target:  5'- cCCGGGAUUCgaCUGaUAGacuCCGCCGACCg -3'
miRNA:   3'- -GGUCUUAAG--GGCcAUUc--GGCGGCUGG- -5'
24824 3' -53.8 NC_005284.1 + 150 0.68 0.684155
Target:  5'- gCCAGAcuucggCuuGGUcacgaacaucGAGCCGCCgGACUg -3'
miRNA:   3'- -GGUCUuaa---GggCCA----------UUCGGCGG-CUGG- -5'
24824 3' -53.8 NC_005284.1 + 18244 0.68 0.684155
Target:  5'- aUCAcGAucGUUCCgccauCGGUGcAGCCGCCG-CCg -3'
miRNA:   3'- -GGU-CU--UAAGG-----GCCAU-UCGGCGGCuGG- -5'
24824 3' -53.8 NC_005284.1 + 41157 0.68 0.705743
Target:  5'- gCCAGAGauagCCgaGGUAuuuuCCGUCGACCg -3'
miRNA:   3'- -GGUCUUaa--GGg-CCAUuc--GGCGGCUGG- -5'
24824 3' -53.8 NC_005284.1 + 48995 0.68 0.716435
Target:  5'- aCGGGgcuGUUCCCGGUGaagucagacAGCaCGgCGACg -3'
miRNA:   3'- gGUCU---UAAGGGCCAU---------UCG-GCgGCUGg -5'
24824 3' -53.8 NC_005284.1 + 112 0.68 0.716435
Target:  5'- gCgGGAAaUCCCGGUAAacGCgCGCUGAa- -3'
miRNA:   3'- -GgUCUUaAGGGCCAUU--CG-GCGGCUgg -5'
24824 3' -53.8 NC_005284.1 + 37831 0.67 0.747971
Target:  5'- gCCGGAAUgugcguggCUauggGGUGAGUCGUCGugCu -3'
miRNA:   3'- -GGUCUUAa-------GGg---CCAUUCGGCGGCugG- -5'
24824 3' -53.8 NC_005284.1 + 53078 0.67 0.757241
Target:  5'- cCCAGAA-UCgCGGcgcaacgcagaagUAAuGCCGCCGcCCg -3'
miRNA:   3'- -GGUCUUaAGgGCC-------------AUU-CGGCGGCuGG- -5'
24824 3' -53.8 NC_005284.1 + 5346 0.67 0.778457
Target:  5'- -aAGAGUggCCGGUcgAGGUCGCCGGa- -3'
miRNA:   3'- ggUCUUAagGGCCA--UUCGGCGGCUgg -5'
24824 3' -53.8 NC_005284.1 + 5439 0.67 0.787352
Target:  5'- uCCGGAAUcguuugugaCCGGUGcauuagucgagcaAGCCGgCGGCUg -3'
miRNA:   3'- -GGUCUUAag-------GGCCAU-------------UCGGCgGCUGG- -5'
24824 3' -53.8 NC_005284.1 + 52737 0.67 0.788333
Target:  5'- aCGGggUggCCGGUGuggcuaAGCaGCCGGCa -3'
miRNA:   3'- gGUCuuAagGGCCAU------UCGgCGGCUGg -5'
24824 3' -53.8 NC_005284.1 + 36247 0.67 0.788333
Target:  5'- gCGGAGUgguuuUCCCGGUcAGUugcguaucgaCGCCGuacGCCg -3'
miRNA:   3'- gGUCUUA-----AGGGCCAuUCG----------GCGGC---UGG- -5'
24824 3' -53.8 NC_005284.1 + 18819 0.67 0.792238
Target:  5'- gCCGuGGUUCCCGGcgaagGGGCCgggcgugcaggggcaGCCGAgCa -3'
miRNA:   3'- -GGUcUUAAGGGCCa----UUCGG---------------CGGCUgG- -5'
24824 3' -53.8 NC_005284.1 + 54686 0.66 0.800928
Target:  5'- aCCGGGAuUUCCCGcagcgauuuuccguGCCGUCGGCUu -3'
miRNA:   3'- -GGUCUU-AAGGGCcauu----------CGGCGGCUGG- -5'
24824 3' -53.8 NC_005284.1 + 21822 0.66 0.815092
Target:  5'- aCGGcGUgCCCGGcgcuuccagcGCCGCCGGCg -3'
miRNA:   3'- gGUCuUAaGGGCCauu-------CGGCGGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.