Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24824 | 3' | -53.8 | NC_005284.1 | + | 35799 | 0.66 | 0.816022 |
Target: 5'- gCCAGcAUUgagccuuucgucgCCCGcGUAGaucguugcGUCGCCGGCCa -3' miRNA: 3'- -GGUCuUAA-------------GGGC-CAUU--------CGGCGGCUGG- -5' |
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24824 | 3' | -53.8 | NC_005284.1 | + | 7126 | 0.66 | 0.816949 |
Target: 5'- uUCAGGAUcgguUCUCGGUcgGAGgUGUCGACg -3' miRNA: 3'- -GGUCUUA----AGGGCCA--UUCgGCGGCUGg -5' |
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24824 | 3' | -53.8 | NC_005284.1 | + | 15268 | 0.66 | 0.826116 |
Target: 5'- ------aUCCCGGcgcaucGGCacaGCCGACCg -3' miRNA: 3'- ggucuuaAGGGCCau----UCGg--CGGCUGG- -5' |
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24824 | 3' | -53.8 | NC_005284.1 | + | 15934 | 0.66 | 0.826116 |
Target: 5'- uCCGGcGUUCCUGacGUcGGCgcgcgaCGCCGGCCc -3' miRNA: 3'- -GGUCuUAAGGGC--CAuUCG------GCGGCUGG- -5' |
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24824 | 3' | -53.8 | NC_005284.1 | + | 49815 | 0.66 | 0.834194 |
Target: 5'- uUCAGAAUuuggccuUCCuCGGUGAGuuGaagcCCGuACCg -3' miRNA: 3'- -GGUCUUA-------AGG-GCCAUUCggC----GGC-UGG- -5' |
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24824 | 3' | -53.8 | NC_005284.1 | + | 16643 | 0.66 | 0.835081 |
Target: 5'- gCAGGAUcaggacuacaUCUCGGguuuuccGGCCGUCGAgCg -3' miRNA: 3'- gGUCUUA----------AGGGCCau-----UCGGCGGCUgG- -5' |
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24824 | 3' | -53.8 | NC_005284.1 | + | 51132 | 0.66 | 0.835081 |
Target: 5'- gCCAcAAUUUCCuuauAGCUGUCGACCa -3' miRNA: 3'- -GGUcUUAAGGGccauUCGGCGGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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