miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24824 5' -54.7 NC_005284.1 + 36287 0.78 0.151033
Target:  5'- --cGCCGGAAUCGacgucacGCCGAGCGCGUUc -3'
miRNA:   3'- guuCGGCCUUGGU-------UGGCUCGCGUAGu -5'
24824 5' -54.7 NC_005284.1 + 37428 0.66 0.719721
Target:  5'- -cGGCCGGGacguuaucgcaGCCGGCCGcgaggaacaucgucGGCGCGaggaUCAg -3'
miRNA:   3'- guUCGGCCU-----------UGGUUGGC--------------UCGCGU----AGU- -5'
24824 5' -54.7 NC_005284.1 + 38584 0.68 0.601632
Target:  5'- -cGGCCGu--UCGGCCGAGCGCAcgCGg -3'
miRNA:   3'- guUCGGCcuuGGUUGGCUCGCGUa-GU- -5'
24824 5' -54.7 NC_005284.1 + 38879 0.68 0.61273
Target:  5'- aAAGCCgGGAAUCAgcACCGAuaGCGCGcgCAc -3'
miRNA:   3'- gUUCGG-CCUUGGU--UGGCU--CGCGUa-GU- -5'
24824 5' -54.7 NC_005284.1 + 42028 0.7 0.503961
Target:  5'- gCGAGCgCGu-GCCGGCCGAGCgGCAUgGa -3'
miRNA:   3'- -GUUCG-GCcuUGGUUGGCUCG-CGUAgU- -5'
24824 5' -54.7 NC_005284.1 + 42636 0.68 0.578423
Target:  5'- uCGAGCCGacAGCCGcgcuugccgcaccACCGAGCGCGcCGa -3'
miRNA:   3'- -GUUCGGCc-UUGGU-------------UGGCUCGCGUaGU- -5'
24824 5' -54.7 NC_005284.1 + 42814 0.67 0.679328
Target:  5'- --cGCCGcGAA-CGACaCGAGUGCAUCc -3'
miRNA:   3'- guuCGGC-CUUgGUUG-GCUCGCGUAGu -5'
24824 5' -54.7 NC_005284.1 + 43819 0.66 0.722951
Target:  5'- uUAAG-CGGGACC-GCCGuGCGCcgAUCGa -3'
miRNA:   3'- -GUUCgGCCUUGGuUGGCuCGCG--UAGU- -5'
24824 5' -54.7 NC_005284.1 + 43857 0.72 0.37701
Target:  5'- gAGGCCGG--CCAugCGGgccuGCGCAUCAu -3'
miRNA:   3'- gUUCGGCCuuGGUugGCU----CGCGUAGU- -5'
24824 5' -54.7 NC_005284.1 + 44254 0.73 0.326123
Target:  5'- cCAGGCCggcgaGGAAUCGAUCGAGCGCugccugAUCGg -3'
miRNA:   3'- -GUUCGG-----CCUUGGUUGGCUCGCG------UAGU- -5'
24824 5' -54.7 NC_005284.1 + 44617 1.08 0.001224
Target:  5'- gCAAGCCGGAACCAACCGAGCGCAUCAu -3'
miRNA:   3'- -GUUCGGCCUUGGUUGGCUCGCGUAGU- -5'
24824 5' -54.7 NC_005284.1 + 46548 0.67 0.690331
Target:  5'- --uGCC-GAGCCGcaGCgCGAGCGaCAUCAg -3'
miRNA:   3'- guuCGGcCUUGGU--UG-GCUCGC-GUAGU- -5'
24824 5' -54.7 NC_005284.1 + 47708 0.66 0.705637
Target:  5'- cCAAGUCGGcaAGCCGAUCGgcgucggugaacgucGGCGCGUa- -3'
miRNA:   3'- -GUUCGGCC--UUGGUUGGC---------------UCGCGUAgu -5'
24824 5' -54.7 NC_005284.1 + 48126 0.69 0.557595
Target:  5'- -cGGCCGucGCCaAACCcGGCGCGUCu -3'
miRNA:   3'- guUCGGCcuUGG-UUGGcUCGCGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.