Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24824 | 5' | -54.7 | NC_005284.1 | + | 24399 | 0.73 | 0.350912 |
Target: 5'- aCAuGCCG--ACCAgcacacgcggGCCGAGCGCAUCGc -3' miRNA: 3'- -GUuCGGCcuUGGU----------UGGCUCGCGUAGU- -5' |
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24824 | 5' | -54.7 | NC_005284.1 | + | 44254 | 0.73 | 0.326123 |
Target: 5'- cCAGGCCggcgaGGAAUCGAUCGAGCGCugccugAUCGg -3' miRNA: 3'- -GUUCGG-----CCUUGGUUGGCUCGCG------UAGU- -5' |
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24824 | 5' | -54.7 | NC_005284.1 | + | 19648 | 0.78 | 0.164583 |
Target: 5'- ----aCGGAGCCGACCGGGCGCA-CAu -3' miRNA: 3'- guucgGCCUUGGUUGGCUCGCGUaGU- -5' |
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24824 | 5' | -54.7 | NC_005284.1 | + | 36287 | 0.78 | 0.151033 |
Target: 5'- --cGCCGGAAUCGacgucacGCCGAGCGCGUUc -3' miRNA: 3'- guuCGGCCUUGGU-------UGGCUCGCGUAGu -5' |
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24824 | 5' | -54.7 | NC_005284.1 | + | 20705 | 0.69 | 0.568533 |
Target: 5'- -cGGCaCGGAACCGggggcgGCCGAgGCGUAUUu -3' miRNA: 3'- guUCG-GCCUUGGU------UGGCU-CGCGUAGu -5' |
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24824 | 5' | -54.7 | NC_005284.1 | + | 42636 | 0.68 | 0.578423 |
Target: 5'- uCGAGCCGacAGCCGcgcuugccgcaccACCGAGCGCGcCGa -3' miRNA: 3'- -GUUCGGCc-UUGGU-------------UGGCUCGCGUaGU- -5' |
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24824 | 5' | -54.7 | NC_005284.1 | + | 16085 | 0.68 | 0.579525 |
Target: 5'- uGAGCCGGcAGCCGauacguccAUCGAGCcuuucgccGCGUCGa -3' miRNA: 3'- gUUCGGCC-UUGGU--------UGGCUCG--------CGUAGU- -5' |
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24824 | 5' | -54.7 | NC_005284.1 | + | 38879 | 0.68 | 0.61273 |
Target: 5'- aAAGCCgGGAAUCAgcACCGAuaGCGCGcgCAc -3' miRNA: 3'- gUUCGG-CCUUGGU--UGGCU--CGCGUa-GU- -5' |
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24824 | 5' | -54.7 | NC_005284.1 | + | 27375 | 0.67 | 0.679328 |
Target: 5'- cCAAGCCGGAGCUcGCUGAuaccCGgAUCu -3' miRNA: 3'- -GUUCGGCCUUGGuUGGCUc---GCgUAGu -5' |
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24824 | 5' | -54.7 | NC_005284.1 | + | 42814 | 0.67 | 0.679328 |
Target: 5'- --cGCCGcGAA-CGACaCGAGUGCAUCc -3' miRNA: 3'- guuCGGC-CUUgGUUG-GCUCGCGUAGu -5' |
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24824 | 5' | -54.7 | NC_005284.1 | + | 46548 | 0.67 | 0.690331 |
Target: 5'- --uGCC-GAGCCGcaGCgCGAGCGaCAUCAg -3' miRNA: 3'- guuCGGcCUUGGU--UG-GCUCGC-GUAGU- -5' |
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24824 | 5' | -54.7 | NC_005284.1 | + | 27843 | 0.66 | 0.701277 |
Target: 5'- --cGCUGGGagucGCCAgacgacgcGCCGcccGGCGCAUCGc -3' miRNA: 3'- guuCGGCCU----UGGU--------UGGC---UCGCGUAGU- -5' |
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24824 | 5' | -54.7 | NC_005284.1 | + | 47708 | 0.66 | 0.705637 |
Target: 5'- cCAAGUCGGcaAGCCGAUCGgcgucggugaacgucGGCGCGUa- -3' miRNA: 3'- -GUUCGGCC--UUGGUUGGC---------------UCGCGUAgu -5' |
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24824 | 5' | -54.7 | NC_005284.1 | + | 44617 | 1.08 | 0.001224 |
Target: 5'- gCAAGCCGGAACCAACCGAGCGCAUCAu -3' miRNA: 3'- -GUUCGGCCUUGGUUGGCUCGCGUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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