miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24825 3' -52.1 NC_005284.1 + 36595 0.74 0.483852
Target:  5'- --cGUCGAUCGccgcguacuuccccGGCUCGuacuGCGUCGCGUu -3'
miRNA:   3'- guaCAGCUAGU--------------CUGAGC----UGCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 36509 0.69 0.737237
Target:  5'- gUAUGUCGAgaggCGGACguUCGACGgCG-GCg -3'
miRNA:   3'- -GUACAGCUa---GUCUG--AGCUGCaGCgCG- -5'
24825 3' -52.1 NC_005284.1 + 35273 0.67 0.844794
Target:  5'- ---aUCGggUGGugUCGGCGUCcauGCGCu -3'
miRNA:   3'- guacAGCuaGUCugAGCUGCAG---CGCG- -5'
24825 3' -52.1 NC_005284.1 + 33613 0.66 0.892794
Target:  5'- gCGUGcUCGAUgAGccguuGCUCGAgcCG-CGCGCg -3'
miRNA:   3'- -GUAC-AGCUAgUC-----UGAGCU--GCaGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 33258 0.72 0.550638
Target:  5'- gAUGUgcgcCGAUCAGguGCUCGACGcaaGCGCc -3'
miRNA:   3'- gUACA----GCUAGUC--UGAGCUGCag-CGCG- -5'
24825 3' -52.1 NC_005284.1 + 33143 0.69 0.76851
Target:  5'- uCGUGcgcggCGAUCGcacgcuGCUCGGCGUCgaGCGCg -3'
miRNA:   3'- -GUACa----GCUAGUc-----UGAGCUGCAG--CGCG- -5'
24825 3' -52.1 NC_005284.1 + 32013 0.68 0.808152
Target:  5'- --gGUCGuUgAGGCU-GACGaUCGCGCg -3'
miRNA:   3'- guaCAGCuAgUCUGAgCUGC-AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 31272 0.66 0.906707
Target:  5'- gCGUGUCGGcgaUCAGGCg-GAacagGUcCGCGCg -3'
miRNA:   3'- -GUACAGCU---AGUCUGagCUg---CA-GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 31132 0.67 0.82689
Target:  5'- gAUGUCGcgGUCGGcCUCuuccugguugacGAuCGUCGCGCc -3'
miRNA:   3'- gUACAGC--UAGUCuGAG------------CU-GCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 29906 0.7 0.704995
Target:  5'- aAUGUCGAgaAGagcacuacgaguGCUCGACGUgCGUGCu -3'
miRNA:   3'- gUACAGCUagUC------------UGAGCUGCA-GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 23490 0.67 0.844794
Target:  5'- -cUGUCGAUCcGGCgUGGCG-CGCGg -3'
miRNA:   3'- guACAGCUAGuCUGaGCUGCaGCGCg -5'
24825 3' -52.1 NC_005284.1 + 23081 0.66 0.906707
Target:  5'- gUAUGUCGAUgcGGCU--ACGUaCGCGCu -3'
miRNA:   3'- -GUACAGCUAguCUGAgcUGCA-GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 21585 0.71 0.643299
Target:  5'- -uUGUCGAaguggcgCAGAUguucaagggaaccgaUCGACGUCGCGa -3'
miRNA:   3'- guACAGCUa------GUCUG---------------AGCUGCAGCGCg -5'
24825 3' -52.1 NC_005284.1 + 17803 0.76 0.35423
Target:  5'- gGUGUCGuuucagGUCGGGCUCGACGggacgcuuugUGCGCc -3'
miRNA:   3'- gUACAGC------UAGUCUGAGCUGCa---------GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 17658 0.67 0.835951
Target:  5'- -cUGUCGAgcccgugcaGGACgaCGACGggaUCGCGCg -3'
miRNA:   3'- guACAGCUag-------UCUGa-GCUGC---AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 17573 0.69 0.747785
Target:  5'- -cUGUCGGUCAacaccGACaUCGGCGUCagcuaCGCg -3'
miRNA:   3'- guACAGCUAGU-----CUG-AGCUGCAGc----GCG- -5'
24825 3' -52.1 NC_005284.1 + 16676 0.67 0.844794
Target:  5'- --cGUCGAgcgUgAGGC-CGGCGUCgGCGUg -3'
miRNA:   3'- guaCAGCU---AgUCUGaGCUGCAG-CGCG- -5'
24825 3' -52.1 NC_005284.1 + 14850 0.7 0.672099
Target:  5'- cCGUGUCGGUCGaguGGCUCGAaaaCGCaGCa -3'
miRNA:   3'- -GUACAGCUAGU---CUGAGCUgcaGCG-CG- -5'
24825 3' -52.1 NC_005284.1 + 13174 0.76 0.380457
Target:  5'- gCGUGUCGGagcUCGcACUCGGCGcggccUCGCGCg -3'
miRNA:   3'- -GUACAGCU---AGUcUGAGCUGC-----AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 11246 0.66 0.892794
Target:  5'- uGUGUCGAcCAacgcGGCagCGGC-UCGCGCg -3'
miRNA:   3'- gUACAGCUaGU----CUGa-GCUGcAGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.