miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24825 3' -52.1 NC_005284.1 + 53515 0.67 0.82689
Target:  5'- -uUGUCGAagcaCGGcccCUCGAUGuUCGCGCc -3'
miRNA:   3'- guACAGCUa---GUCu--GAGCUGC-AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 51199 0.66 0.877807
Target:  5'- --cGUCGA-CuGACUUGACGUCGa-- -3'
miRNA:   3'- guaCAGCUaGuCUGAGCUGCAGCgcg -5'
24825 3' -52.1 NC_005284.1 + 49262 0.66 0.87703
Target:  5'- --cG-CGAUCAGGaggCGACGUgacgaagCGCGCu -3'
miRNA:   3'- guaCaGCUAGUCUga-GCUGCA-------GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 46892 0.71 0.616647
Target:  5'- aCAUG-CGGUCGccGACgUCGGC-UCGCGCa -3'
miRNA:   3'- -GUACaGCUAGU--CUG-AGCUGcAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 46684 0.66 0.906707
Target:  5'- -----aGGUCGGGCUCGAguCGgaaaCGCGCc -3'
miRNA:   3'- guacagCUAGUCUGAGCU--GCa---GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 46043 0.74 0.486948
Target:  5'- --cGUCGAgCAGGcCUCGACGgcaaGCGCu -3'
miRNA:   3'- guaCAGCUaGUCU-GAGCUGCag--CGCG- -5'
24825 3' -52.1 NC_005284.1 + 45891 0.73 0.529072
Target:  5'- --cGUCGAgCGGuuGC-CGugGUCGCGCg -3'
miRNA:   3'- guaCAGCUaGUC--UGaGCugCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 45412 0.66 0.906707
Target:  5'- aGUGUCGcaGUCGcggccggcGACgauauucgCGGCGUCGCGa -3'
miRNA:   3'- gUACAGC--UAGU--------CUGa-------GCUGCAGCGCg -5'
24825 3' -52.1 NC_005284.1 + 45157 0.66 0.892794
Target:  5'- --gGUCGA-CGcACggCGACGUCGgGCa -3'
miRNA:   3'- guaCAGCUaGUcUGa-GCUGCAGCgCG- -5'
24825 3' -52.1 NC_005284.1 + 44571 0.66 0.899887
Target:  5'- uGUGUCGAUCacguccuggcGGACaaCGACGUUGUa- -3'
miRNA:   3'- gUACAGCUAG----------UCUGa-GCUGCAGCGcg -5'
24825 3' -52.1 NC_005284.1 + 44491 1.12 0.001639
Target:  5'- gCAUGUCGAUCAGACUCGACGUCGCGCu -3'
miRNA:   3'- -GUACAGCUAGUCUGAGCUGCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 44188 0.73 0.518406
Target:  5'- --gGUCGAUCAGucGCcCGAUcUCGCGCg -3'
miRNA:   3'- guaCAGCUAGUC--UGaGCUGcAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 44113 0.73 0.497338
Target:  5'- cCGUGUCGAUCGcGCccgCGGCGcgcaccaguuccUCGCGCa -3'
miRNA:   3'- -GUACAGCUAGUcUGa--GCUGC------------AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 43435 0.66 0.899887
Target:  5'- -uUGUCGGUUGcGACcgccUCGACGcgcagUUGCGCg -3'
miRNA:   3'- guACAGCUAGU-CUG----AGCUGC-----AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 42015 0.67 0.853409
Target:  5'- gCAUGcCGAUCgAGGaaaUCGAUGaUCGCGg -3'
miRNA:   3'- -GUACaGCUAG-UCUg--AGCUGC-AGCGCg -5'
24825 3' -52.1 NC_005284.1 + 38824 0.7 0.672099
Target:  5'- --cGUUGAacacggcgaacgUgAGGC-CGGCGUCGCGCg -3'
miRNA:   3'- guaCAGCU------------AgUCUGaGCUGCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 38075 0.7 0.672099
Target:  5'- uCGUGcCGAUguGGCUCG---UCGCGCg -3'
miRNA:   3'- -GUACaGCUAguCUGAGCugcAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 37092 0.66 0.885433
Target:  5'- --cGcCGGcgAGAUUCagGGCGUCGCGCa -3'
miRNA:   3'- guaCaGCUagUCUGAG--CUGCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 36778 0.7 0.672099
Target:  5'- cCGUGUCGccGUCGaccGACUUGACuG-CGCGCg -3'
miRNA:   3'- -GUACAGC--UAGU---CUGAGCUG-CaGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 36640 0.66 0.877807
Target:  5'- uCGUGUagaCGAUCuGGC-CGuCGUCGuCGCu -3'
miRNA:   3'- -GUACA---GCUAGuCUGaGCuGCAGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.