miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24825 3' -52.1 NC_005284.1 + 4899 0.73 0.497338
Target:  5'- --cGUCGcGUCAGAuuCUCGACGaUGCGCc -3'
miRNA:   3'- guaCAGC-UAGUCU--GAGCUGCaGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 5792 0.69 0.758213
Target:  5'- --cGcCGAUCGuuucGCUCGAgGUUGCGCu -3'
miRNA:   3'- guaCaGCUAGUc---UGAGCUgCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 6922 0.67 0.853409
Target:  5'- gGUGgugCGAagGGGuauCUCGGCGUCGCa- -3'
miRNA:   3'- gUACa--GCUagUCU---GAGCUGCAGCGcg -5'
24825 3' -52.1 NC_005284.1 + 7306 0.67 0.853409
Target:  5'- ---cUCGGUguGGC-CGACGUCGaGCa -3'
miRNA:   3'- guacAGCUAguCUGaGCUGCAGCgCG- -5'
24825 3' -52.1 NC_005284.1 + 7667 0.66 0.906707
Target:  5'- --cGUCGGUCaauGGGCUgauuucggCGACGUacaGCGUg -3'
miRNA:   3'- guaCAGCUAG---UCUGA--------GCUGCAg--CGCG- -5'
24825 3' -52.1 NC_005284.1 + 9199 0.66 0.892794
Target:  5'- gCGUGUaugUGAUCAGGCgUCGAUagccgagUGCGCg -3'
miRNA:   3'- -GUACA---GCUAGUCUG-AGCUGca-----GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 9291 0.66 0.885433
Target:  5'- --cGaCGAUCGGGCagaCGAUGaCGCGCc -3'
miRNA:   3'- guaCaGCUAGUCUGa--GCUGCaGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 9648 0.7 0.712588
Target:  5'- --cGUCGAccacgccuugcccaUCAG-CUCGACGaUCGCaGCg -3'
miRNA:   3'- guaCAGCU--------------AGUCuGAGCUGC-AGCG-CG- -5'
24825 3' -52.1 NC_005284.1 + 9808 0.7 0.694087
Target:  5'- --cGUCGccggcaGUCAGGaaaUCGGCG-CGCGCa -3'
miRNA:   3'- guaCAGC------UAGUCUg--AGCUGCaGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 10042 0.66 0.90469
Target:  5'- gAUGUCGcgcuugccacgCAGGCUCGugagcgaGCGgaaCGCGCg -3'
miRNA:   3'- gUACAGCua---------GUCUGAGC-------UGCa--GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 10571 0.68 0.808152
Target:  5'- --cGUCGAaccUCGGcgUCGACGagaaaUCGCGCg -3'
miRNA:   3'- guaCAGCU---AGUCugAGCUGC-----AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 11246 0.66 0.892794
Target:  5'- uGUGUCGAcCAacgcGGCagCGGC-UCGCGCg -3'
miRNA:   3'- gUACAGCUaGU----CUGa-GCUGcAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 13174 0.76 0.380457
Target:  5'- gCGUGUCGGagcUCGcACUCGGCGcggccUCGCGCg -3'
miRNA:   3'- -GUACAGCU---AGUcUGAGCUGC-----AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 14850 0.7 0.672099
Target:  5'- cCGUGUCGGUCGaguGGCUCGAaaaCGCaGCa -3'
miRNA:   3'- -GUACAGCUAGU---CUGAGCUgcaGCG-CG- -5'
24825 3' -52.1 NC_005284.1 + 16676 0.67 0.844794
Target:  5'- --cGUCGAgcgUgAGGC-CGGCGUCgGCGUg -3'
miRNA:   3'- guaCAGCU---AgUCUGaGCUGCAG-CGCG- -5'
24825 3' -52.1 NC_005284.1 + 17573 0.69 0.747785
Target:  5'- -cUGUCGGUCAacaccGACaUCGGCGUCagcuaCGCg -3'
miRNA:   3'- guACAGCUAGU-----CUG-AGCUGCAGc----GCG- -5'
24825 3' -52.1 NC_005284.1 + 17658 0.67 0.835951
Target:  5'- -cUGUCGAgcccgugcaGGACgaCGACGggaUCGCGCg -3'
miRNA:   3'- guACAGCUag-------UCUGa-GCUGC---AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 17803 0.76 0.35423
Target:  5'- gGUGUCGuuucagGUCGGGCUCGACGggacgcuuugUGCGCc -3'
miRNA:   3'- gUACAGC------UAGUCUGAGCUGCa---------GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 21585 0.71 0.643299
Target:  5'- -uUGUCGAaguggcgCAGAUguucaagggaaccgaUCGACGUCGCGa -3'
miRNA:   3'- guACAGCUa------GUCUG---------------AGCUGCAGCGCg -5'
24825 3' -52.1 NC_005284.1 + 23081 0.66 0.906707
Target:  5'- gUAUGUCGAUgcGGCU--ACGUaCGCGCu -3'
miRNA:   3'- -GUACAGCUAguCUGAgcUGCA-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.