miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24825 3' -52.1 NC_005284.1 + 44491 1.12 0.001639
Target:  5'- gCAUGUCGAUCAGACUCGACGUCGCGCu -3'
miRNA:   3'- -GUACAGCUAGUCUGAGCUGCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 17803 0.76 0.35423
Target:  5'- gGUGUCGuuucagGUCGGGCUCGACGggacgcuuugUGCGCc -3'
miRNA:   3'- gUACAGC------UAGUCUGAGCUGCa---------GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 13174 0.76 0.380457
Target:  5'- gCGUGUCGGagcUCGcACUCGGCGcggccUCGCGCg -3'
miRNA:   3'- -GUACAGCU---AGUcUGAGCUGC-----AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 36595 0.74 0.483852
Target:  5'- --cGUCGAUCGccgcguacuuccccGGCUCGuacuGCGUCGCGUu -3'
miRNA:   3'- guaCAGCUAGU--------------CUGAGC----UGCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 46043 0.74 0.486948
Target:  5'- --cGUCGAgCAGGcCUCGACGgcaaGCGCu -3'
miRNA:   3'- guaCAGCUaGUCU-GAGCUGCag--CGCG- -5'
24825 3' -52.1 NC_005284.1 + 44113 0.73 0.497338
Target:  5'- cCGUGUCGAUCGcGCccgCGGCGcgcaccaguuccUCGCGCa -3'
miRNA:   3'- -GUACAGCUAGUcUGa--GCUGC------------AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 4899 0.73 0.497338
Target:  5'- --cGUCGcGUCAGAuuCUCGACGaUGCGCc -3'
miRNA:   3'- guaCAGC-UAGUCU--GAGCUGCaGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 44188 0.73 0.518406
Target:  5'- --gGUCGAUCAGucGCcCGAUcUCGCGCg -3'
miRNA:   3'- guaCAGCUAGUC--UGaGCUGcAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 45891 0.73 0.529072
Target:  5'- --cGUCGAgCGGuuGC-CGugGUCGCGCg -3'
miRNA:   3'- guaCAGCUaGUC--UGaGCugCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 33258 0.72 0.550638
Target:  5'- gAUGUgcgcCGAUCAGguGCUCGACGcaaGCGCc -3'
miRNA:   3'- gUACA----GCUAGUC--UGAGCUGCag-CGCG- -5'
24825 3' -52.1 NC_005284.1 + 46892 0.71 0.616647
Target:  5'- aCAUG-CGGUCGccGACgUCGGC-UCGCGCa -3'
miRNA:   3'- -GUACaGCUAGU--CUG-AGCUGcAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 21585 0.71 0.643299
Target:  5'- -uUGUCGAaguggcgCAGAUguucaagggaaccgaUCGACGUCGCGa -3'
miRNA:   3'- guACAGCUa------GUCUG---------------AGCUGCAGCGCg -5'
24825 3' -52.1 NC_005284.1 + 36778 0.7 0.672099
Target:  5'- cCGUGUCGccGUCGaccGACUUGACuG-CGCGCg -3'
miRNA:   3'- -GUACAGC--UAGU---CUGAGCUG-CaGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 14850 0.7 0.672099
Target:  5'- cCGUGUCGGUCGaguGGCUCGAaaaCGCaGCa -3'
miRNA:   3'- -GUACAGCUAGU---CUGAGCUgcaGCG-CG- -5'
24825 3' -52.1 NC_005284.1 + 38824 0.7 0.672099
Target:  5'- --cGUUGAacacggcgaacgUgAGGC-CGGCGUCGCGCg -3'
miRNA:   3'- guaCAGCU------------AgUCUGaGCUGCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 38075 0.7 0.672099
Target:  5'- uCGUGcCGAUguGGCUCG---UCGCGCg -3'
miRNA:   3'- -GUACaGCUAguCUGAGCugcAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 9808 0.7 0.694087
Target:  5'- --cGUCGccggcaGUCAGGaaaUCGGCG-CGCGCa -3'
miRNA:   3'- guaCAGC------UAGUCUg--AGCUGCaGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 29906 0.7 0.704995
Target:  5'- aAUGUCGAgaAGagcacuacgaguGCUCGACGUgCGUGCu -3'
miRNA:   3'- gUACAGCUagUC------------UGAGCUGCA-GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 9648 0.7 0.712588
Target:  5'- --cGUCGAccacgccuugcccaUCAG-CUCGACGaUCGCaGCg -3'
miRNA:   3'- guaCAGCU--------------AGUCuGAGCUGC-AGCG-CG- -5'
24825 3' -52.1 NC_005284.1 + 36509 0.69 0.737237
Target:  5'- gUAUGUCGAgaggCGGACguUCGACGgCG-GCg -3'
miRNA:   3'- -GUACAGCUa---GUCUG--AGCUGCaGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.