miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24825 3' -52.1 NC_005284.1 + 46684 0.66 0.906707
Target:  5'- -----aGGUCGGGCUCGAguCGgaaaCGCGCc -3'
miRNA:   3'- guacagCUAGUCUGAGCU--GCa---GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 6922 0.67 0.853409
Target:  5'- gGUGgugCGAagGGGuauCUCGGCGUCGCa- -3'
miRNA:   3'- gUACa--GCUagUCU---GAGCUGCAGCGcg -5'
24825 3' -52.1 NC_005284.1 + 49262 0.66 0.87703
Target:  5'- --cG-CGAUCAGGaggCGACGUgacgaagCGCGCu -3'
miRNA:   3'- guaCaGCUAGUCUga-GCUGCA-------GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 9291 0.66 0.885433
Target:  5'- --cGaCGAUCGGGCagaCGAUGaCGCGCc -3'
miRNA:   3'- guaCaGCUAGUCUGa--GCUGCaGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 37092 0.66 0.885433
Target:  5'- --cGcCGGcgAGAUUCagGGCGUCGCGCa -3'
miRNA:   3'- guaCaGCUagUCUGAG--CUGCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 11246 0.66 0.892794
Target:  5'- uGUGUCGAcCAacgcGGCagCGGC-UCGCGCg -3'
miRNA:   3'- gUACAGCUaGU----CUGa-GCUGcAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 45157 0.66 0.892794
Target:  5'- --gGUCGA-CGcACggCGACGUCGgGCa -3'
miRNA:   3'- guaCAGCUaGUcUGa-GCUGCAGCgCG- -5'
24825 3' -52.1 NC_005284.1 + 44571 0.66 0.899887
Target:  5'- uGUGUCGAUCacguccuggcGGACaaCGACGUUGUa- -3'
miRNA:   3'- gUACAGCUAG----------UCUGa-GCUGCAGCGcg -5'
24825 3' -52.1 NC_005284.1 + 10042 0.66 0.90469
Target:  5'- gAUGUCGcgcuugccacgCAGGCUCGugagcgaGCGgaaCGCGCg -3'
miRNA:   3'- gUACAGCua---------GUCUGAGC-------UGCa--GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 35273 0.67 0.844794
Target:  5'- ---aUCGggUGGugUCGGCGUCcauGCGCu -3'
miRNA:   3'- guacAGCuaGUCugAGCUGCAG---CGCG- -5'
24825 3' -52.1 NC_005284.1 + 16676 0.67 0.844794
Target:  5'- --cGUCGAgcgUgAGGC-CGGCGUCgGCGUg -3'
miRNA:   3'- guaCAGCU---AgUCUGaGCUGCAG-CGCG- -5'
24825 3' -52.1 NC_005284.1 + 17658 0.67 0.835951
Target:  5'- -cUGUCGAgcccgugcaGGACgaCGACGggaUCGCGCg -3'
miRNA:   3'- guACAGCUag-------UCUGa-GCUGC---AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 46043 0.74 0.486948
Target:  5'- --cGUCGAgCAGGcCUCGACGgcaaGCGCu -3'
miRNA:   3'- guaCAGCUaGUCU-GAGCUGCag--CGCG- -5'
24825 3' -52.1 NC_005284.1 + 4899 0.73 0.497338
Target:  5'- --cGUCGcGUCAGAuuCUCGACGaUGCGCc -3'
miRNA:   3'- guaCAGC-UAGUCU--GAGCUGCaGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 38075 0.7 0.672099
Target:  5'- uCGUGcCGAUguGGCUCG---UCGCGCg -3'
miRNA:   3'- -GUACaGCUAguCUGAGCugcAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 9808 0.7 0.694087
Target:  5'- --cGUCGccggcaGUCAGGaaaUCGGCG-CGCGCa -3'
miRNA:   3'- guaCAGC------UAGUCUg--AGCUGCaGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 29906 0.7 0.704995
Target:  5'- aAUGUCGAgaAGagcacuacgaguGCUCGACGUgCGUGCu -3'
miRNA:   3'- gUACAGCUagUC------------UGAGCUGCA-GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 5792 0.69 0.758213
Target:  5'- --cGcCGAUCGuuucGCUCGAgGUUGCGCu -3'
miRNA:   3'- guaCaGCUAGUc---UGAGCUgCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 10571 0.68 0.808152
Target:  5'- --cGUCGAaccUCGGcgUCGACGagaaaUCGCGCg -3'
miRNA:   3'- guaCAGCU---AGUCugAGCUGC-----AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 31132 0.67 0.82689
Target:  5'- gAUGUCGcgGUCGGcCUCuuccugguugacGAuCGUCGCGCc -3'
miRNA:   3'- gUACAGC--UAGUCuGAG------------CU-GCAGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.