miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24825 3' -52.1 NC_005284.1 + 23081 0.66 0.906707
Target:  5'- gUAUGUCGAUgcGGCU--ACGUaCGCGCu -3'
miRNA:   3'- -GUACAGCUAguCUGAgcUGCA-GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 14850 0.7 0.672099
Target:  5'- cCGUGUCGGUCGaguGGCUCGAaaaCGCaGCa -3'
miRNA:   3'- -GUACAGCUAGU---CUGAGCUgcaGCG-CG- -5'
24825 3' -52.1 NC_005284.1 + 46892 0.71 0.616647
Target:  5'- aCAUG-CGGUCGccGACgUCGGC-UCGCGCa -3'
miRNA:   3'- -GUACaGCUAGU--CUG-AGCUGcAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 44491 1.12 0.001639
Target:  5'- gCAUGUCGAUCAGACUCGACGUCGCGCu -3'
miRNA:   3'- -GUACAGCUAGUCUGAGCUGCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 51199 0.66 0.877807
Target:  5'- --cGUCGA-CuGACUUGACGUCGa-- -3'
miRNA:   3'- guaCAGCUaGuCUGAGCUGCAGCgcg -5'
24825 3' -52.1 NC_005284.1 + 36640 0.66 0.877807
Target:  5'- uCGUGUagaCGAUCuGGC-CGuCGUCGuCGCu -3'
miRNA:   3'- -GUACA---GCUAGuCUGaGCuGCAGC-GCG- -5'
24825 3' -52.1 NC_005284.1 + 42015 0.67 0.853409
Target:  5'- gCAUGcCGAUCgAGGaaaUCGAUGaUCGCGg -3'
miRNA:   3'- -GUACaGCUAG-UCUg--AGCUGC-AGCGCg -5'
24825 3' -52.1 NC_005284.1 + 23490 0.67 0.844794
Target:  5'- -cUGUCGAUCcGGCgUGGCG-CGCGg -3'
miRNA:   3'- guACAGCUAGuCUGaGCUGCaGCGCg -5'
24825 3' -52.1 NC_005284.1 + 33143 0.69 0.76851
Target:  5'- uCGUGcgcggCGAUCGcacgcuGCUCGGCGUCgaGCGCg -3'
miRNA:   3'- -GUACa----GCUAGUc-----UGAGCUGCAG--CGCG- -5'
24825 3' -52.1 NC_005284.1 + 38824 0.7 0.672099
Target:  5'- --cGUUGAacacggcgaacgUgAGGC-CGGCGUCGCGCg -3'
miRNA:   3'- guaCAGCU------------AgUCUGaGCUGCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 36509 0.69 0.737237
Target:  5'- gUAUGUCGAgaggCGGACguUCGACGgCG-GCg -3'
miRNA:   3'- -GUACAGCUa---GUCUG--AGCUGCaGCgCG- -5'
24825 3' -52.1 NC_005284.1 + 32013 0.68 0.808152
Target:  5'- --gGUCGuUgAGGCU-GACGaUCGCGCg -3'
miRNA:   3'- guaCAGCuAgUCUGAgCUGC-AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 43435 0.66 0.899887
Target:  5'- -uUGUCGGUUGcGACcgccUCGACGcgcagUUGCGCg -3'
miRNA:   3'- guACAGCUAGU-CUG----AGCUGC-----AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 9648 0.7 0.712588
Target:  5'- --cGUCGAccacgccuugcccaUCAG-CUCGACGaUCGCaGCg -3'
miRNA:   3'- guaCAGCU--------------AGUCuGAGCUGC-AGCG-CG- -5'
24825 3' -52.1 NC_005284.1 + 33613 0.66 0.892794
Target:  5'- gCGUGcUCGAUgAGccguuGCUCGAgcCG-CGCGCg -3'
miRNA:   3'- -GUAC-AGCUAgUC-----UGAGCU--GCaGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 53515 0.67 0.82689
Target:  5'- -uUGUCGAagcaCGGcccCUCGAUGuUCGCGCc -3'
miRNA:   3'- guACAGCUa---GUCu--GAGCUGC-AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 36778 0.7 0.672099
Target:  5'- cCGUGUCGccGUCGaccGACUUGACuG-CGCGCg -3'
miRNA:   3'- -GUACAGC--UAGU---CUGAGCUG-CaGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 21585 0.71 0.643299
Target:  5'- -uUGUCGAaguggcgCAGAUguucaagggaaccgaUCGACGUCGCGa -3'
miRNA:   3'- guACAGCUa------GUCUG---------------AGCUGCAGCGCg -5'
24825 3' -52.1 NC_005284.1 + 9199 0.66 0.892794
Target:  5'- gCGUGUaugUGAUCAGGCgUCGAUagccgagUGCGCg -3'
miRNA:   3'- -GUACA---GCUAGUCUG-AGCUGca-----GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 7306 0.67 0.853409
Target:  5'- ---cUCGGUguGGC-CGACGUCGaGCa -3'
miRNA:   3'- guacAGCUAguCUGaGCUGCAGCgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.