miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24825 3' -52.1 NC_005284.1 + 46892 0.71 0.616647
Target:  5'- aCAUG-CGGUCGccGACgUCGGC-UCGCGCa -3'
miRNA:   3'- -GUACaGCUAGU--CUG-AGCUGcAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 44491 1.12 0.001639
Target:  5'- gCAUGUCGAUCAGACUCGACGUCGCGCu -3'
miRNA:   3'- -GUACAGCUAGUCUGAGCUGCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 33143 0.69 0.76851
Target:  5'- uCGUGcgcggCGAUCGcacgcuGCUCGGCGUCgaGCGCg -3'
miRNA:   3'- -GUACa----GCUAGUc-----UGAGCUGCAG--CGCG- -5'
24825 3' -52.1 NC_005284.1 + 33258 0.72 0.550638
Target:  5'- gAUGUgcgcCGAUCAGguGCUCGACGcaaGCGCc -3'
miRNA:   3'- gUACA----GCUAGUC--UGAGCUGCag-CGCG- -5'
24825 3' -52.1 NC_005284.1 + 44113 0.73 0.497338
Target:  5'- cCGUGUCGAUCGcGCccgCGGCGcgcaccaguuccUCGCGCa -3'
miRNA:   3'- -GUACAGCUAGUcUGa--GCUGC------------AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 14850 0.7 0.672099
Target:  5'- cCGUGUCGGUCGaguGGCUCGAaaaCGCaGCa -3'
miRNA:   3'- -GUACAGCUAGU---CUGAGCUgcaGCG-CG- -5'
24825 3' -52.1 NC_005284.1 + 45891 0.73 0.529072
Target:  5'- --cGUCGAgCGGuuGC-CGugGUCGCGCg -3'
miRNA:   3'- guaCAGCUaGUC--UGaGCugCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 49262 0.66 0.87703
Target:  5'- --cG-CGAUCAGGaggCGACGUgacgaagCGCGCu -3'
miRNA:   3'- guaCaGCUAGUCUga-GCUGCA-------GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 10042 0.66 0.90469
Target:  5'- gAUGUCGcgcuugccacgCAGGCUCGugagcgaGCGgaaCGCGCg -3'
miRNA:   3'- gUACAGCua---------GUCUGAGC-------UGCa--GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 4899 0.73 0.497338
Target:  5'- --cGUCGcGUCAGAuuCUCGACGaUGCGCc -3'
miRNA:   3'- guaCAGC-UAGUCU--GAGCUGCaGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 7667 0.66 0.906707
Target:  5'- --cGUCGGUCaauGGGCUgauuucggCGACGUacaGCGUg -3'
miRNA:   3'- guaCAGCUAG---UCUGA--------GCUGCAg--CGCG- -5'
24825 3' -52.1 NC_005284.1 + 29906 0.7 0.704995
Target:  5'- aAUGUCGAgaAGagcacuacgaguGCUCGACGUgCGUGCu -3'
miRNA:   3'- gUACAGCUagUC------------UGAGCUGCA-GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 31272 0.66 0.906707
Target:  5'- gCGUGUCGGcgaUCAGGCg-GAacagGUcCGCGCg -3'
miRNA:   3'- -GUACAGCU---AGUCUGagCUg---CA-GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 5792 0.69 0.758213
Target:  5'- --cGcCGAUCGuuucGCUCGAgGUUGCGCu -3'
miRNA:   3'- guaCaGCUAGUc---UGAGCUgCAGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 45412 0.66 0.906707
Target:  5'- aGUGUCGcaGUCGcggccggcGACgauauucgCGGCGUCGCGa -3'
miRNA:   3'- gUACAGC--UAGU--------CUGa-------GCUGCAGCGCg -5'
24825 3' -52.1 NC_005284.1 + 9291 0.66 0.885433
Target:  5'- --cGaCGAUCGGGCagaCGAUGaCGCGCc -3'
miRNA:   3'- guaCaGCUAGUCUGa--GCUGCaGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 17658 0.67 0.835951
Target:  5'- -cUGUCGAgcccgugcaGGACgaCGACGggaUCGCGCg -3'
miRNA:   3'- guACAGCUag-------UCUGa-GCUGC---AGCGCG- -5'
24825 3' -52.1 NC_005284.1 + 46684 0.66 0.906707
Target:  5'- -----aGGUCGGGCUCGAguCGgaaaCGCGCc -3'
miRNA:   3'- guacagCUAGUCUGAGCU--GCa---GCGCG- -5'
24825 3' -52.1 NC_005284.1 + 35273 0.67 0.844794
Target:  5'- ---aUCGggUGGugUCGGCGUCcauGCGCu -3'
miRNA:   3'- guacAGCuaGUCugAGCUGCAG---CGCG- -5'
24825 3' -52.1 NC_005284.1 + 6922 0.67 0.853409
Target:  5'- gGUGgugCGAagGGGuauCUCGGCGUCGCa- -3'
miRNA:   3'- gUACa--GCUagUCU---GAGCUGCAGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.