miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 3' -57 NC_005284.1 + 54382 0.66 0.639624
Target:  5'- -gCACCGGgGGUGCGgugcgcucgUCGCgAAugGUa -3'
miRNA:   3'- ugGUGGCUgCCGCGU---------AGCGgUUugCA- -5'
24826 3' -57 NC_005284.1 + 1073 0.66 0.639624
Target:  5'- uACUACCGACGuGCuGUcuaagAUCGCC-AGCGc -3'
miRNA:   3'- -UGGUGGCUGC-CG-CG-----UAGCGGuUUGCa -5'
24826 3' -57 NC_005284.1 + 9243 0.66 0.639624
Target:  5'- cGCCACgCGGCGGCaUAgagCGCgGAGCa- -3'
miRNA:   3'- -UGGUG-GCUGCCGcGUa--GCGgUUUGca -5'
24826 3' -57 NC_005284.1 + 6030 0.66 0.639624
Target:  5'- cGCaACUcGCGGCGCA-CGCCGcGCGg -3'
miRNA:   3'- -UGgUGGcUGCCGCGUaGCGGUuUGCa -5'
24826 3' -57 NC_005284.1 + 43088 0.66 0.639624
Target:  5'- cCCGUCGACGGCGaaacuCGUCGCuCAcGCGa -3'
miRNA:   3'- uGGUGGCUGCCGC-----GUAGCG-GUuUGCa -5'
24826 3' -57 NC_005284.1 + 25528 0.66 0.638536
Target:  5'- aGCgGCCGuCGucgugcGCGCGUCGCUcuauuuuGAGCGUg -3'
miRNA:   3'- -UGgUGGCuGC------CGCGUAGCGG-------UUUGCA- -5'
24826 3' -57 NC_005284.1 + 15889 0.66 0.628744
Target:  5'- gACCGCagaGGCGGUGCGcgCGCUAu-CGg -3'
miRNA:   3'- -UGGUGg--CUGCCGCGUa-GCGGUuuGCa -5'
24826 3' -57 NC_005284.1 + 33385 0.66 0.628744
Target:  5'- cGCUGCCGACGGC---UCGCCAucaccCGa -3'
miRNA:   3'- -UGGUGGCUGCCGcguAGCGGUuu---GCa -5'
24826 3' -57 NC_005284.1 + 12441 0.66 0.627655
Target:  5'- cGCCAguuucgaUCGAgGGCGgAUCGUCGAACc- -3'
miRNA:   3'- -UGGU-------GGCUgCCGCgUAGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 54330 0.66 0.617866
Target:  5'- -gCGCCGACcaGGCGCugccggcUCGCCGGGuCGa -3'
miRNA:   3'- ugGUGGCUG--CCGCGu------AGCGGUUU-GCa -5'
24826 3' -57 NC_005284.1 + 37382 0.66 0.617866
Target:  5'- -aCGCCG-CGGU-CGUCGCCGuAGCGUu -3'
miRNA:   3'- ugGUGGCuGCCGcGUAGCGGU-UUGCA- -5'
24826 3' -57 NC_005284.1 + 4349 0.66 0.617866
Target:  5'- uCCGCCGGCgagaaGGCGC-UCGCUgAAGCa- -3'
miRNA:   3'- uGGUGGCUG-----CCGCGuAGCGG-UUUGca -5'
24826 3' -57 NC_005284.1 + 51813 0.66 0.617866
Target:  5'- gGCCugC-AUGGCGC--CGCCAAACu- -3'
miRNA:   3'- -UGGugGcUGCCGCGuaGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 32991 0.66 0.617866
Target:  5'- cGCCACCGGCugccGUGCAgUGUCGGACa- -3'
miRNA:   3'- -UGGUGGCUGc---CGCGUaGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 4674 0.66 0.617866
Target:  5'- -aCGCCG-CGuGCGCgAUCGCCGcguuACGUu -3'
miRNA:   3'- ugGUGGCuGC-CGCG-UAGCGGUu---UGCA- -5'
24826 3' -57 NC_005284.1 + 38909 0.66 0.616779
Target:  5'- cACCGCCucugcggcgacgaGACGGCaaggcggugaauGCGUCcgaaacgcacGCCGAGCGUg -3'
miRNA:   3'- -UGGUGG-------------CUGCCG------------CGUAG----------CGGUUUGCA- -5'
24826 3' -57 NC_005284.1 + 44934 0.66 0.607001
Target:  5'- -gCACCGcgccuCGGUGUAUCGCCcgcCGUg -3'
miRNA:   3'- ugGUGGCu----GCCGCGUAGCGGuuuGCA- -5'
24826 3' -57 NC_005284.1 + 10761 0.66 0.607001
Target:  5'- gGCCGCCGAgGGCGUucggcUGCUuucuGACGc -3'
miRNA:   3'- -UGGUGGCUgCCGCGua---GCGGu---UUGCa -5'
24826 3' -57 NC_005284.1 + 21782 0.66 0.607001
Target:  5'- cAUCACCgGGCaGCaGCAUCGCCcgcuGCGg -3'
miRNA:   3'- -UGGUGG-CUGcCG-CGUAGCGGuu--UGCa -5'
24826 3' -57 NC_005284.1 + 32674 0.66 0.596156
Target:  5'- -gCAUCGGCGGgggccagcggacCGCAagCGCCAAGCGc -3'
miRNA:   3'- ugGUGGCUGCC------------GCGUa-GCGGUUUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.