miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 3' -57 NC_005284.1 + 44300 1.06 0.001068
Target:  5'- gACCACCGACGGCGCAUCGCCAAACGUc -3'
miRNA:   3'- -UGGUGGCUGCCGCGUAGCGGUUUGCA- -5'
24826 3' -57 NC_005284.1 + 48252 0.82 0.057916
Target:  5'- -aCGCUGACGGCGCGUUGCCGuGCGg -3'
miRNA:   3'- ugGUGGCUGCCGCGUAGCGGUuUGCa -5'
24826 3' -57 NC_005284.1 + 1128 0.8 0.093933
Target:  5'- aACCcgGgCGACGGCGCGUCGCCAu-CGUg -3'
miRNA:   3'- -UGG--UgGCUGCCGCGUAGCGGUuuGCA- -5'
24826 3' -57 NC_005284.1 + 32957 0.78 0.124178
Target:  5'- -aCGCCGGCGGCGCuggaagCGCCGGGCa- -3'
miRNA:   3'- ugGUGGCUGCCGCGua----GCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 27865 0.78 0.117482
Target:  5'- cGCCGCC--CGGCGCAUCGCCGAAaucaGUc -3'
miRNA:   3'- -UGGUGGcuGCCGCGUAGCGGUUUg---CA- -5'
24826 3' -57 NC_005284.1 + 52 0.77 0.150489
Target:  5'- cCCACC--CGGCGCAUcCGCCGGGCGg -3'
miRNA:   3'- uGGUGGcuGCCGCGUA-GCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 23438 0.76 0.156326
Target:  5'- gGCCACCGACaGCGCGuguucugcgcgucgcUCGCC-GACGUu -3'
miRNA:   3'- -UGGUGGCUGcCGCGU---------------AGCGGuUUGCA- -5'
24826 3' -57 NC_005284.1 + 46576 0.76 0.172287
Target:  5'- uGCCGagcaUGGCGGCGCAgugggcaaCGCCGAACGUc -3'
miRNA:   3'- -UGGUg---GCUGCCGCGUa-------GCGGUUUGCA- -5'
24826 3' -57 NC_005284.1 + 22578 0.76 0.172287
Target:  5'- aGCUAUCGGCGGCGCAcauUCGUCucGCGa -3'
miRNA:   3'- -UGGUGGCUGCCGCGU---AGCGGuuUGCa -5'
24826 3' -57 NC_005284.1 + 45555 0.75 0.186683
Target:  5'- uGCCGCCGcguGGCGCGUCGCCc-GCGc -3'
miRNA:   3'- -UGGUGGCug-CCGCGUAGCGGuuUGCa -5'
24826 3' -57 NC_005284.1 + 18563 0.74 0.218672
Target:  5'- cGCCGCCGuCGGuCGUGUCGCUGAcuGCGg -3'
miRNA:   3'- -UGGUGGCuGCC-GCGUAGCGGUU--UGCa -5'
24826 3' -57 NC_005284.1 + 44706 0.73 0.255229
Target:  5'- cCCGCCG-CGGuCGCgGUCGCCGcGCGUu -3'
miRNA:   3'- uGGUGGCuGCC-GCG-UAGCGGUuUGCA- -5'
24826 3' -57 NC_005284.1 + 12991 0.73 0.261788
Target:  5'- uGCCACCGAuCGGaCGCAUaaagaagccuaCGCCAAuCGUc -3'
miRNA:   3'- -UGGUGGCU-GCC-GCGUA-----------GCGGUUuGCA- -5'
24826 3' -57 NC_005284.1 + 7733 0.73 0.242515
Target:  5'- cGCCGCCGGCGGCGUAacUCcCCGAuCGc -3'
miRNA:   3'- -UGGUGGCUGCCGCGU--AGcGGUUuGCa -5'
24826 3' -57 NC_005284.1 + 28666 0.72 0.282289
Target:  5'- cACCGCCGACGGUGUccaacaugggcUUGCCGAugGc -3'
miRNA:   3'- -UGGUGGCUGCCGCGu----------AGCGGUUugCa -5'
24826 3' -57 NC_005284.1 + 21321 0.72 0.311573
Target:  5'- cGCCgGCCGACGGCGCGUguaaGCacuGCGg -3'
miRNA:   3'- -UGG-UGGCUGCCGCGUAg---CGguuUGCa -5'
24826 3' -57 NC_005284.1 + 36847 0.72 0.29665
Target:  5'- gAUCGCCGGCGGCGauugucggCGCCuugucGAGCGUg -3'
miRNA:   3'- -UGGUGGCUGCCGCgua-----GCGG-----UUUGCA- -5'
24826 3' -57 NC_005284.1 + 42517 0.72 0.2894
Target:  5'- cACCACUG-CGGCGCGgaccacgaacUCGCCGuuCGa -3'
miRNA:   3'- -UGGUGGCuGCCGCGU----------AGCGGUuuGCa -5'
24826 3' -57 NC_005284.1 + 23354 0.71 0.327059
Target:  5'- gGCgCGCCGcaGCGGCGCAcgUCGCCc-GCGa -3'
miRNA:   3'- -UG-GUGGC--UGCCGCGU--AGCGGuuUGCa -5'
24826 3' -57 NC_005284.1 + 45196 0.71 0.327059
Target:  5'- cGCCGCCG-CGGCaGCGcgaUCGCCcuGCGc -3'
miRNA:   3'- -UGGUGGCuGCCG-CGU---AGCGGuuUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.