miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 3' -57 NC_005284.1 + 54382 0.66 0.639624
Target:  5'- -gCACCGGgGGUGCGgugcgcucgUCGCgAAugGUa -3'
miRNA:   3'- ugGUGGCUgCCGCGU---------AGCGgUUugCA- -5'
24826 3' -57 NC_005284.1 + 54330 0.66 0.617866
Target:  5'- -gCGCCGACcaGGCGCugccggcUCGCCGGGuCGa -3'
miRNA:   3'- ugGUGGCUG--CCGCGu------AGCGGUUU-GCa -5'
24826 3' -57 NC_005284.1 + 51813 0.66 0.617866
Target:  5'- gGCCugC-AUGGCGC--CGCCAAACu- -3'
miRNA:   3'- -UGGugGcUGCCGCGuaGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 49351 0.71 0.359718
Target:  5'- gACgACCGAacuauCGGuCGCAgcuUCGCCGAGCGc -3'
miRNA:   3'- -UGgUGGCU-----GCC-GCGU---AGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 48952 0.7 0.41282
Target:  5'- uGCC-CCGGCGGacuGCAUCGaCgAAGCGg -3'
miRNA:   3'- -UGGuGGCUGCCg--CGUAGC-GgUUUGCa -5'
24826 3' -57 NC_005284.1 + 48252 0.82 0.057916
Target:  5'- -aCGCUGACGGCGCGUUGCCGuGCGg -3'
miRNA:   3'- ugGUGGCUGCCGCGUAGCGGUuUGCa -5'
24826 3' -57 NC_005284.1 + 47689 0.67 0.531998
Target:  5'- uGCCGCUGACGGCaaggaaggGCAcgCGCgCucGCGUg -3'
miRNA:   3'- -UGGUGGCUGCCG--------CGUa-GCG-GuuUGCA- -5'
24826 3' -57 NC_005284.1 + 47273 0.69 0.441124
Target:  5'- aACCucgugAUCGACGGC-CGUCGCC--GCGUg -3'
miRNA:   3'- -UGG-----UGGCUGCCGcGUAGCGGuuUGCA- -5'
24826 3' -57 NC_005284.1 + 47066 0.7 0.385665
Target:  5'- cGCCGCCGGCGGCgGCAcgaGCUucGGCGc -3'
miRNA:   3'- -UGGUGGCUGCCG-CGUag-CGGu-UUGCa -5'
24826 3' -57 NC_005284.1 + 46689 0.69 0.422131
Target:  5'- cGCCGCCGcgaccGCGGuUGCAUCGUCGucCGa -3'
miRNA:   3'- -UGGUGGC-----UGCC-GCGUAGCGGUuuGCa -5'
24826 3' -57 NC_005284.1 + 46576 0.76 0.172287
Target:  5'- uGCCGagcaUGGCGGCGCAgugggcaaCGCCGAACGUc -3'
miRNA:   3'- -UGGUg---GCUGCCGCGUa-------GCGGUUUGCA- -5'
24826 3' -57 NC_005284.1 + 46346 0.67 0.585342
Target:  5'- uCCGCCGucGCGG-GC-UCGCCGGACc- -3'
miRNA:   3'- uGGUGGC--UGCCgCGuAGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 45555 0.75 0.186683
Target:  5'- uGCCGCCGcguGGCGCGUCGCCc-GCGc -3'
miRNA:   3'- -UGGUGGCug-CCGCGUAGCGGuuUGCa -5'
24826 3' -57 NC_005284.1 + 45269 0.7 0.41282
Target:  5'- uCC-UCGACGaGCGC-UCGCCGGGCGc -3'
miRNA:   3'- uGGuGGCUGC-CGCGuAGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 45196 0.71 0.327059
Target:  5'- cGCCGCCG-CGGCaGCGcgaUCGCCcuGCGc -3'
miRNA:   3'- -UGGUGGCuGCCG-CGU---AGCGGuuUGCa -5'
24826 3' -57 NC_005284.1 + 44991 0.71 0.359718
Target:  5'- gACUGCCGGCgacguuGGCGCG-CGCCGuugcGACGUg -3'
miRNA:   3'- -UGGUGGCUG------CCGCGUaGCGGU----UUGCA- -5'
24826 3' -57 NC_005284.1 + 44934 0.66 0.607001
Target:  5'- -gCACCGcgccuCGGUGUAUCGCCcgcCGUg -3'
miRNA:   3'- ugGUGGCu----GCCGCGUAGCGGuuuGCA- -5'
24826 3' -57 NC_005284.1 + 44706 0.73 0.255229
Target:  5'- cCCGCCG-CGGuCGCgGUCGCCGcGCGUu -3'
miRNA:   3'- uGGUGGCuGCC-GCG-UAGCGGUuUGCA- -5'
24826 3' -57 NC_005284.1 + 44300 1.06 0.001068
Target:  5'- gACCACCGACGGCGCAUCGCCAAACGUc -3'
miRNA:   3'- -UGGUGGCUGCCGCGUAGCGGUUUGCA- -5'
24826 3' -57 NC_005284.1 + 43088 0.66 0.639624
Target:  5'- cCCGUCGACGGCGaaacuCGUCGCuCAcGCGa -3'
miRNA:   3'- uGGUGGCUGCCGC-----GUAGCG-GUuUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.