miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 3' -57 NC_005284.1 + 22796 0.67 0.528849
Target:  5'- gACCAuCCGGagaucCGGCGCGuguUCGCCGguuuccauaucgagAGCGUg -3'
miRNA:   3'- -UGGU-GGCU-----GCCGCGU---AGCGGU--------------UUGCA- -5'
24826 3' -57 NC_005284.1 + 47273 0.69 0.441124
Target:  5'- aACCucgugAUCGACGGC-CGUCGCC--GCGUg -3'
miRNA:   3'- -UGG-----UGGCUGCCGcGUAGCGGuuUGCA- -5'
24826 3' -57 NC_005284.1 + 38715 0.69 0.450801
Target:  5'- gGCUGCCGGCucaauGCGCugcauggCGCCGGACGg -3'
miRNA:   3'- -UGGUGGCUGc----CGCGua-----GCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 34795 0.68 0.470496
Target:  5'- uUCGCCGACcucgucauaGGCGCGgUCGCCGAucauaucgaucACGUc -3'
miRNA:   3'- uGGUGGCUG---------CCGCGU-AGCGGUU-----------UGCA- -5'
24826 3' -57 NC_005284.1 + 33043 0.68 0.500832
Target:  5'- cGCgCACUGGCGGCacacacCAUCGCCGuucuCGUa -3'
miRNA:   3'- -UG-GUGGCUGCCGc-----GUAGCGGUuu--GCA- -5'
24826 3' -57 NC_005284.1 + 17882 0.68 0.500832
Target:  5'- gGCCGCCGGaucggcgGGCGCAUcCGCgcAGCGg -3'
miRNA:   3'- -UGGUGGCUg------CCGCGUA-GCGguUUGCa -5'
24826 3' -57 NC_005284.1 + 15462 0.68 0.500832
Target:  5'- uGCUACgCGAuCGuGCGCGacugguaucUCGCCGAGCGc -3'
miRNA:   3'- -UGGUG-GCU-GC-CGCGU---------AGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 10940 0.68 0.511136
Target:  5'- cCCGCaUGGcCGGCcuCGUCGCCGGACGa -3'
miRNA:   3'- uGGUG-GCU-GCCGc-GUAGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 30930 0.68 0.521526
Target:  5'- -gCGCCG-UGGCGCuuUCGCCGccGGCGa -3'
miRNA:   3'- ugGUGGCuGCCGCGu-AGCGGU--UUGCa -5'
24826 3' -57 NC_005284.1 + 11860 0.69 0.422131
Target:  5'- uGCagGCCGACuGGCGCGUCGgCGugaAGCGg -3'
miRNA:   3'- -UGg-UGGCUG-CCGCGUAGCgGU---UUGCa -5'
24826 3' -57 NC_005284.1 + 10126 0.69 0.422131
Target:  5'- aGCgCGgCGACGGCGCAgacggCGCuCGcGCGUa -3'
miRNA:   3'- -UG-GUgGCUGCCGCGUa----GCG-GUuUGCA- -5'
24826 3' -57 NC_005284.1 + 19021 0.69 0.422131
Target:  5'- cGCUGCaGGCGGCG-AUCGCCGAggGCGa -3'
miRNA:   3'- -UGGUGgCUGCCGCgUAGCGGUU--UGCa -5'
24826 3' -57 NC_005284.1 + 1128 0.8 0.093933
Target:  5'- aACCcgGgCGACGGCGCGUCGCCAu-CGUg -3'
miRNA:   3'- -UGG--UgGCUGCCGCGUAGCGGUuuGCA- -5'
24826 3' -57 NC_005284.1 + 22578 0.76 0.172287
Target:  5'- aGCUAUCGGCGGCGCAcauUCGUCucGCGa -3'
miRNA:   3'- -UGGUGGCUGCCGCGU---AGCGGuuUGCa -5'
24826 3' -57 NC_005284.1 + 46576 0.76 0.172287
Target:  5'- uGCCGagcaUGGCGGCGCAgugggcaaCGCCGAACGUc -3'
miRNA:   3'- -UGGUg---GCUGCCGCGUa-------GCGGUUUGCA- -5'
24826 3' -57 NC_005284.1 + 45555 0.75 0.186683
Target:  5'- uGCCGCCGcguGGCGCGUCGCCc-GCGc -3'
miRNA:   3'- -UGGUGGCug-CCGCGUAGCGGuuUGCa -5'
24826 3' -57 NC_005284.1 + 18563 0.74 0.218672
Target:  5'- cGCCGCCGuCGGuCGUGUCGCUGAcuGCGg -3'
miRNA:   3'- -UGGUGGCuGCC-GCGUAGCGGUU--UGCa -5'
24826 3' -57 NC_005284.1 + 7733 0.73 0.242515
Target:  5'- cGCCGCCGGCGGCGUAacUCcCCGAuCGc -3'
miRNA:   3'- -UGGUGGCUGCCGCGU--AGcGGUUuGCa -5'
24826 3' -57 NC_005284.1 + 49351 0.71 0.359718
Target:  5'- gACgACCGAacuauCGGuCGCAgcuUCGCCGAGCGc -3'
miRNA:   3'- -UGgUGGCU-----GCC-GCGU---AGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 48952 0.7 0.41282
Target:  5'- uGCC-CCGGCGGacuGCAUCGaCgAAGCGg -3'
miRNA:   3'- -UGGuGGCUGCCg--CGUAGC-GgUUUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.