miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 3' -57 NC_005284.1 + 43088 0.66 0.639624
Target:  5'- cCCGUCGACGGCGaaacuCGUCGCuCAcGCGa -3'
miRNA:   3'- uGGUGGCUGCCGC-----GUAGCG-GUuUGCa -5'
24826 3' -57 NC_005284.1 + 35866 0.68 0.521526
Target:  5'- uCgAUCGGCGcGCGCAgcuccgUGCCAAGCGc -3'
miRNA:   3'- uGgUGGCUGC-CGCGUa-----GCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 35976 0.68 0.500832
Target:  5'- uUCGCCGggaaccACGGCccgaCGUUGCCGGACGUg -3'
miRNA:   3'- uGGUGGC------UGCCGc---GUAGCGGUUUGCA- -5'
24826 3' -57 NC_005284.1 + 44300 1.06 0.001068
Target:  5'- gACCACCGACGGCGCAUCGCCAAACGUc -3'
miRNA:   3'- -UGGUGGCUGCCGCGUAGCGGUUUGCA- -5'
24826 3' -57 NC_005284.1 + 4674 0.66 0.617866
Target:  5'- -aCGCCG-CGuGCGCgAUCGCCGcguuACGUu -3'
miRNA:   3'- ugGUGGCuGC-CGCG-UAGCGGUu---UGCA- -5'
24826 3' -57 NC_005284.1 + 54330 0.66 0.617866
Target:  5'- -gCGCCGACcaGGCGCugccggcUCGCCGGGuCGa -3'
miRNA:   3'- ugGUGGCUG--CCGCGu------AGCGGUUU-GCa -5'
24826 3' -57 NC_005284.1 + 32991 0.66 0.617866
Target:  5'- cGCCACCGGCugccGUGCAgUGUCGGACa- -3'
miRNA:   3'- -UGGUGGCUGc---CGCGUaGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 38909 0.66 0.616779
Target:  5'- cACCGCCucugcggcgacgaGACGGCaaggcggugaauGCGUCcgaaacgcacGCCGAGCGUg -3'
miRNA:   3'- -UGGUGG-------------CUGCCG------------CGUAG----------CGGUUUGCA- -5'
24826 3' -57 NC_005284.1 + 46346 0.67 0.585342
Target:  5'- uCCGCCGucGCGG-GC-UCGCCGGACc- -3'
miRNA:   3'- uGGUGGC--UGCCgCGuAGCGGUUUGca -5'
24826 3' -57 NC_005284.1 + 38078 0.67 0.531998
Target:  5'- gGCgCACCcACGGCGCGUCGgaCGucAGCGg -3'
miRNA:   3'- -UG-GUGGcUGCCGCGUAGCg-GU--UUGCa -5'
24826 3' -57 NC_005284.1 + 39440 0.67 0.563836
Target:  5'- aGCCAUCGGCc-UGCA-CGCCGAGCGa -3'
miRNA:   3'- -UGGUGGCUGccGCGUaGCGGUUUGCa -5'
24826 3' -57 NC_005284.1 + 11573 0.66 0.596156
Target:  5'- aGCCGCCuuucGCGGCG-AUCGUUAGugGa -3'
miRNA:   3'- -UGGUGGc---UGCCGCgUAGCGGUUugCa -5'
24826 3' -57 NC_005284.1 + 6030 0.66 0.639624
Target:  5'- cGCaACUcGCGGCGCA-CGCCGcGCGg -3'
miRNA:   3'- -UGgUGGcUGCCGCGUaGCGGUuUGCa -5'
24826 3' -57 NC_005284.1 + 16200 0.67 0.55316
Target:  5'- cUCGCCG-CGuGCGC-UCGgCCGAACGg -3'
miRNA:   3'- uGGUGGCuGC-CGCGuAGC-GGUUUGCa -5'
24826 3' -57 NC_005284.1 + 9243 0.66 0.639624
Target:  5'- cGCCACgCGGCGGCaUAgagCGCgGAGCa- -3'
miRNA:   3'- -UGGUG-GCUGCCGcGUa--GCGgUUUGca -5'
24826 3' -57 NC_005284.1 + 21782 0.66 0.607001
Target:  5'- cAUCACCgGGCaGCaGCAUCGCCcgcuGCGg -3'
miRNA:   3'- -UGGUGG-CUGcCG-CGUAGCGGuu--UGCa -5'
24826 3' -57 NC_005284.1 + 1858 0.67 0.55316
Target:  5'- aGCCAUCGGCuucGGCGCccUGCCGuuccACGUg -3'
miRNA:   3'- -UGGUGGCUG---CCGCGuaGCGGUu---UGCA- -5'
24826 3' -57 NC_005284.1 + 5163 0.68 0.521526
Target:  5'- cGCCGCUGACGcGCG-AUCaGCuCAAACGc -3'
miRNA:   3'- -UGGUGGCUGC-CGCgUAG-CG-GUUUGCa -5'
24826 3' -57 NC_005284.1 + 1073 0.66 0.639624
Target:  5'- uACUACCGACGuGCuGUcuaagAUCGCC-AGCGc -3'
miRNA:   3'- -UGGUGGCUGC-CG-CG-----UAGCGGuUUGCa -5'
24826 3' -57 NC_005284.1 + 51813 0.66 0.617866
Target:  5'- gGCCugC-AUGGCGC--CGCCAAACu- -3'
miRNA:   3'- -UGGugGcUGCCGCGuaGCGGUUUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.