miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 5' -58.4 NC_005284.1 + 6541 0.66 0.575026
Target:  5'- cGGCAac--GCGCCGUCaGCGUCaGUCu -3'
miRNA:   3'- aCUGUgaaaCGCGGCGGgCGCAG-CGG- -5'
24826 5' -58.4 NC_005284.1 + 11753 0.66 0.575026
Target:  5'- cGGCACgcUGgGuUCGCCCGaguacaUCGCCg -3'
miRNA:   3'- aCUGUGaaACgC-GGCGGGCgc----AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 272 0.66 0.575026
Target:  5'- cGGCGCaagaUGCGCUGCCUGaucuuGUC-CCa -3'
miRNA:   3'- aCUGUGaa--ACGCGGCGGGCg----CAGcGG- -5'
24826 5' -58.4 NC_005284.1 + 50307 0.66 0.575026
Target:  5'- cGGCGCUac-CGCCGCC-GCGa-GCCa -3'
miRNA:   3'- aCUGUGAaacGCGGCGGgCGCagCGG- -5'
24826 5' -58.4 NC_005284.1 + 30215 0.66 0.575026
Target:  5'- gUGcCACUgcgUGUaGCCGUCgGCGUCggucugGCCg -3'
miRNA:   3'- -ACuGUGAa--ACG-CGGCGGgCGCAG------CGG- -5'
24826 5' -58.4 NC_005284.1 + 26771 0.66 0.56442
Target:  5'- cUGGCGCUgcaaccaUGUCGCCCGCGggauagaGCUg -3'
miRNA:   3'- -ACUGUGAaac----GCGGCGGGCGCag-----CGG- -5'
24826 5' -58.4 NC_005284.1 + 41802 0.66 0.558081
Target:  5'- cGACGCgguugUUGuCGCCGCCacuuccgcugggugGC-UCGCCc -3'
miRNA:   3'- aCUGUGa----AAC-GCGGCGGg-------------CGcAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 14600 0.66 0.558081
Target:  5'- cGGCGCgaaaguguuccgGCGCCgaacGCUCGCG-CGCUa -3'
miRNA:   3'- aCUGUGaaa---------CGCGG----CGGGCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 22105 0.66 0.553867
Target:  5'- uUGGCGC-UUGCGguCCGCUgGCcccCGCCg -3'
miRNA:   3'- -ACUGUGaAACGC--GGCGGgCGca-GCGG- -5'
24826 5' -58.4 NC_005284.1 + 42266 0.66 0.543373
Target:  5'- gGGCGagugUGCGCCGgUCGUcgagGUCGUCa -3'
miRNA:   3'- aCUGUgaa-ACGCGGCgGGCG----CAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 45005 0.66 0.540237
Target:  5'- uUGGCGC---GCGCCGUUgcgacgugagcuugCGcCGUCGCCu -3'
miRNA:   3'- -ACUGUGaaaCGCGGCGG--------------GC-GCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 20814 0.66 0.532945
Target:  5'- -aGCAUa--GCGUCGgUCGCGUCGUCg -3'
miRNA:   3'- acUGUGaaaCGCGGCgGGCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 1217 0.66 0.532945
Target:  5'- cGGCAUgg-GCGCgCGCCgGCa--GCCg -3'
miRNA:   3'- aCUGUGaaaCGCG-GCGGgCGcagCGG- -5'
24826 5' -58.4 NC_005284.1 + 27105 0.66 0.522589
Target:  5'- aGGCA----GCGgCGaCCCGCG-CGCCa -3'
miRNA:   3'- aCUGUgaaaCGCgGC-GGGCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 37379 0.66 0.522589
Target:  5'- uUGACGCcgcgGuCGUCGCCguaGCGUUGCa -3'
miRNA:   3'- -ACUGUGaaa-C-GCGGCGGg--CGCAGCGg -5'
24826 5' -58.4 NC_005284.1 + 23366 0.66 0.522589
Target:  5'- cGGCGCa---CGUCGCCCGCGaacuggCGCa -3'
miRNA:   3'- aCUGUGaaacGCGGCGGGCGCa-----GCGg -5'
24826 5' -58.4 NC_005284.1 + 54717 0.67 0.512312
Target:  5'- gUGGCcCguccgucgUUGC-CCGCCCGgCGgaugCGCCg -3'
miRNA:   3'- -ACUGuGa-------AACGcGGCGGGC-GCa---GCGG- -5'
24826 5' -58.4 NC_005284.1 + 36500 0.67 0.512312
Target:  5'- gGACACUcaGCGCuCGCauaaggcaGCGUUGCa -3'
miRNA:   3'- aCUGUGAaaCGCG-GCGgg------CGCAGCGg -5'
24826 5' -58.4 NC_005284.1 + 6774 0.67 0.512312
Target:  5'- cGACACggucacGCGCgucaCGCCCGCGaauucCGCa -3'
miRNA:   3'- aCUGUGaaa---CGCG----GCGGGCGCa----GCGg -5'
24826 5' -58.4 NC_005284.1 + 51226 0.67 0.512312
Target:  5'- aGGCACggaccUUGUaGCCGCCUuuaccguucuuGCGUUGCa -3'
miRNA:   3'- aCUGUGa----AACG-CGGCGGG-----------CGCAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.