miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 5' -58.4 NC_005284.1 + 44334 1.12 0.000302
Target:  5'- aUGACACUUUGCGCCGCCCGCGUCGCCa -3'
miRNA:   3'- -ACUGUGAAACGCGGCGGGCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 45299 0.85 0.031887
Target:  5'- -cACGCUgu-CGCCGCCUGCGUCGCCg -3'
miRNA:   3'- acUGUGAaacGCGGCGGGCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 21832 0.8 0.072851
Target:  5'- cGGCGCUUccaGCGCCGCCgGCGUgggcgauggugcCGCCg -3'
miRNA:   3'- aCUGUGAAa--CGCGGCGGgCGCA------------GCGG- -5'
24826 5' -58.4 NC_005284.1 + 45233 0.79 0.086197
Target:  5'- -aGCGCUgccUGCGCCGCCuCGUGUUGCUu -3'
miRNA:   3'- acUGUGAa--ACGCGGCGG-GCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 53664 0.78 0.104707
Target:  5'- cGACGCgc--CGUCGCCCGgGUUGCCa -3'
miRNA:   3'- aCUGUGaaacGCGGCGGGCgCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 27857 0.77 0.110649
Target:  5'- aGACGac--GCGCCGCCCGgCGcaUCGCCg -3'
miRNA:   3'- aCUGUgaaaCGCGGCGGGC-GC--AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 44655 0.75 0.161845
Target:  5'- -cGCGCga-GCGCCGUCUGCGccgUCGCCg -3'
miRNA:   3'- acUGUGaaaCGCGGCGGGCGC---AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 33941 0.74 0.194776
Target:  5'- gGAUuuGCggaaGCGCCGCCCGC-UCGUCg -3'
miRNA:   3'- aCUG--UGaaa-CGCGGCGGGCGcAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 44507 0.73 0.199934
Target:  5'- cGACGuc--GCGCUGCUCGCGUUGUCg -3'
miRNA:   3'- aCUGUgaaaCGCGGCGGGCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 10920 0.73 0.205209
Target:  5'- gGGCGCgaaugaUGCGCagGCCCGCauggccggccucGUCGCCg -3'
miRNA:   3'- aCUGUGaa----ACGCGg-CGGGCG------------CAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 32964 0.73 0.210605
Target:  5'- cGGCGCUggaaGCGCCGggcaCGcCGUCGCCa -3'
miRNA:   3'- aCUGUGAaa--CGCGGCgg--GC-GCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 30935 0.73 0.216123
Target:  5'- gUGGCGCUUU-CGCCGCCgGCGaUCaCCc -3'
miRNA:   3'- -ACUGUGAAAcGCGGCGGgCGC-AGcGG- -5'
24826 5' -58.4 NC_005284.1 + 4538 0.72 0.233422
Target:  5'- cUGACGCUUcaGCGUCGCCguuCGCGUCagGCUg -3'
miRNA:   3'- -ACUGUGAAa-CGCGGCGG---GCGCAG--CGG- -5'
24826 5' -58.4 NC_005284.1 + 31432 0.72 0.239442
Target:  5'- gGGCGacgUGCGCCG-CUGCGgcgCGCCg -3'
miRNA:   3'- aCUGUgaaACGCGGCgGGCGCa--GCGG- -5'
24826 5' -58.4 NC_005284.1 + 33279 0.72 0.245591
Target:  5'- cGACGCaa-GCGCCGgCCGCcaUGCCa -3'
miRNA:   3'- aCUGUGaaaCGCGGCgGGCGcaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 6939 0.72 0.251871
Target:  5'- gUGGC-CUccugUGCGCUuUCCGCGUCGUCa -3'
miRNA:   3'- -ACUGuGAa---ACGCGGcGGGCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 44367 0.72 0.251871
Target:  5'- cGAUAUgccgacUGCgcgucaucgGCCGCCCGCGaCGCCu -3'
miRNA:   3'- aCUGUGaa----ACG---------CGGCGGGCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 44154 0.72 0.264826
Target:  5'- -aGCGCUU--CGCCGCCgCuCGUCGCCg -3'
miRNA:   3'- acUGUGAAacGCGGCGG-GcGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 45546 0.71 0.285264
Target:  5'- -cGCGCUcuaUGcCGCCGCguggCGCGUCGCCc -3'
miRNA:   3'- acUGUGAa--AC-GCGGCGg---GCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 17829 0.71 0.292348
Target:  5'- gGACGCUUugUGCGCCGggacaggugaUCGCcGUUGCCg -3'
miRNA:   3'- aCUGUGAA--ACGCGGCg---------GGCG-CAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.