miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 5' -58.4 NC_005284.1 + 13163 0.69 0.36228
Target:  5'- --cCGCUc-GCGUCGUCCGUGcCGCCa -3'
miRNA:   3'- acuGUGAaaCGCGGCGGGCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 13187 0.7 0.314423
Target:  5'- -cGCACUcgGCGCgGCCuCGCG-CGCg -3'
miRNA:   3'- acUGUGAaaCGCGgCGG-GCGCaGCGg -5'
24826 5' -58.4 NC_005284.1 + 14600 0.66 0.558081
Target:  5'- cGGCGCgaaaguguuccgGCGCCgaacGCUCGCG-CGCUa -3'
miRNA:   3'- aCUGUGaaa---------CGCGG----CGGGCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 15784 0.68 0.414967
Target:  5'- gUGGCAacucGCGCaUGCgUUGCGUCGCCa -3'
miRNA:   3'- -ACUGUgaaaCGCG-GCG-GGCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 15951 0.68 0.433546
Target:  5'- cGGCGCgcgaCGCCgGCCCaCGuUCGCCg -3'
miRNA:   3'- aCUGUGaaacGCGG-CGGGcGC-AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 16094 0.68 0.452599
Target:  5'- cGAUuCUcgGCGCCGCaCU-CGUUGCCg -3'
miRNA:   3'- aCUGuGAaaCGCGGCG-GGcGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 17829 0.71 0.292348
Target:  5'- gGACGCUUugUGCGCCGggacaggugaUCGCcGUUGCCg -3'
miRNA:   3'- aCUGUGAA--ACGCGGCg---------GGCG-CAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 17940 0.67 0.4721
Target:  5'- aGGCGCcgacaauCGCCGCCgGCGaCGCUu -3'
miRNA:   3'- aCUGUGaaac---GCGGCGGgCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 20814 0.66 0.532945
Target:  5'- -aGCAUa--GCGUCGgUCGCGUCGUCg -3'
miRNA:   3'- acUGUGaaaCGCGGCgGGCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 21768 0.7 0.329827
Target:  5'- cUGGCACUga--GCgGCUgCGCGUCGCUg -3'
miRNA:   3'- -ACUGUGAaacgCGgCGG-GCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 21832 0.8 0.072851
Target:  5'- cGGCGCUUccaGCGCCGCCgGCGUgggcgauggugcCGCCg -3'
miRNA:   3'- aCUGUGAAa--CGCGGCGGgCGCA------------GCGG- -5'
24826 5' -58.4 NC_005284.1 + 21886 0.68 0.433546
Target:  5'- cGACGCagcggUUGCGgaaCGCguuuuCgGCGUCGCCg -3'
miRNA:   3'- aCUGUGa----AACGCg--GCG-----GgCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 22105 0.66 0.553867
Target:  5'- uUGGCGC-UUGCGguCCGCUgGCcccCGCCg -3'
miRNA:   3'- -ACUGUGaAACGC--GGCGGgCGca-GCGG- -5'
24826 5' -58.4 NC_005284.1 + 23279 0.7 0.31216
Target:  5'- aGGCGCgcgGUGCCGauaucggcguguauCCCgGCGUCGUCg -3'
miRNA:   3'- aCUGUGaaaCGCGGC--------------GGG-CGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 23366 0.66 0.522589
Target:  5'- cGGCGCa---CGUCGCCCGCGaacuggCGCa -3'
miRNA:   3'- aCUGUGaaacGCGGCGGGCGCa-----GCGg -5'
24826 5' -58.4 NC_005284.1 + 26771 0.66 0.56442
Target:  5'- cUGGCGCUgcaaccaUGUCGCCCGCGggauagaGCUg -3'
miRNA:   3'- -ACUGUGAaac----GCGGCGGGCGCag-----CGG- -5'
24826 5' -58.4 NC_005284.1 + 27105 0.66 0.522589
Target:  5'- aGGCA----GCGgCGaCCCGCG-CGCCa -3'
miRNA:   3'- aCUGUgaaaCGCgGC-GGGCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 27857 0.77 0.110649
Target:  5'- aGACGac--GCGCCGCCCGgCGcaUCGCCg -3'
miRNA:   3'- aCUGUgaaaCGCGGCGGGC-GC--AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 30215 0.66 0.575026
Target:  5'- gUGcCACUgcgUGUaGCCGUCgGCGUCggucugGCCg -3'
miRNA:   3'- -ACuGUGAa--ACG-CGGCGGgCGCAG------CGG- -5'
24826 5' -58.4 NC_005284.1 + 30376 0.69 0.379318
Target:  5'- gGGCGa--UGCGCUcgGCCCGCGUgUGCUg -3'
miRNA:   3'- aCUGUgaaACGCGG--CGGGCGCA-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.