miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 5' -58.4 NC_005284.1 + 54717 0.67 0.512312
Target:  5'- gUGGCcCguccgucgUUGC-CCGCCCGgCGgaugCGCCg -3'
miRNA:   3'- -ACUGuGa-------AACGcGGCGGGC-GCa---GCGG- -5'
24826 5' -58.4 NC_005284.1 + 54578 0.68 0.451636
Target:  5'- cGGCACaacGCGCUcccacauGcCCCGCGccUCGCCg -3'
miRNA:   3'- aCUGUGaaaCGCGG-------C-GGGCGC--AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 54334 0.7 0.337735
Target:  5'- cGAC-Cag-GCGCUGCCgGC-UCGCCg -3'
miRNA:   3'- aCUGuGaaaCGCGGCGGgCGcAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 53955 0.68 0.452599
Target:  5'- cGGCGCUUgccggUGCGCUuguugagccaGCCgaaCGUCGCCa -3'
miRNA:   3'- aCUGUGAA-----ACGCGG----------CGGgc-GCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 53664 0.78 0.104707
Target:  5'- cGACGCgc--CGUCGCCCGgGUUGCCa -3'
miRNA:   3'- aCUGUGaaacGCGGCGGGCgCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 51226 0.67 0.512312
Target:  5'- aGGCACggaccUUGUaGCCGCCUuuaccguucuuGCGUUGCa -3'
miRNA:   3'- aCUGUGa----AACG-CGGCGGG-----------CGCAGCGg -5'
24826 5' -58.4 NC_005284.1 + 50307 0.66 0.575026
Target:  5'- cGGCGCUac-CGCCGCC-GCGa-GCCa -3'
miRNA:   3'- aCUGUGAaacGCGGCGGgCGCagCGG- -5'
24826 5' -58.4 NC_005284.1 + 48758 0.69 0.379318
Target:  5'- -cGCGCggcgUGCGCCGCgagUUGCGUUGCa -3'
miRNA:   3'- acUGUGaa--ACGCGGCG---GGCGCAGCGg -5'
24826 5' -58.4 NC_005284.1 + 46394 0.68 0.414051
Target:  5'- uUGAC-CUUUGCGCCcugcgacugaaacGCcgccgCCGCGaucaUCGCCg -3'
miRNA:   3'- -ACUGuGAAACGCGG-------------CG-----GGCGC----AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 45546 0.71 0.285264
Target:  5'- -cGCGCUcuaUGcCGCCGCguggCGCGUCGCCc -3'
miRNA:   3'- acUGUGAa--AC-GCGGCGg---GCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 45299 0.85 0.031887
Target:  5'- -cACGCUgu-CGCCGCCUGCGUCGCCg -3'
miRNA:   3'- acUGUGAaacGCGGCGGGCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 45233 0.79 0.086197
Target:  5'- -aGCGCUgccUGCGCCGCCuCGUGUUGCUu -3'
miRNA:   3'- acUGUGAa--ACGCGGCGG-GCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 45005 0.66 0.540237
Target:  5'- uUGGCGC---GCGCCGUUgcgacgugagcuugCGcCGUCGCCu -3'
miRNA:   3'- -ACUGUGaaaCGCGGCGG--------------GC-GCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 44655 0.75 0.161845
Target:  5'- -cGCGCga-GCGCCGUCUGCGccgUCGCCg -3'
miRNA:   3'- acUGUGaaaCGCGGCGGGCGC---AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 44507 0.73 0.199934
Target:  5'- cGACGuc--GCGCUGCUCGCGUUGUCg -3'
miRNA:   3'- aCUGUgaaaCGCGGCGGGCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 44367 0.72 0.251871
Target:  5'- cGAUAUgccgacUGCgcgucaucgGCCGCCCGCGaCGCCu -3'
miRNA:   3'- aCUGUGaa----ACG---------CGGCGGGCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 44334 1.12 0.000302
Target:  5'- aUGACACUUUGCGCCGCCCGCGUCGCCa -3'
miRNA:   3'- -ACUGUGAAACGCGGCGGGCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 44154 0.72 0.264826
Target:  5'- -aGCGCUU--CGCCGCCgCuCGUCGCCg -3'
miRNA:   3'- acUGUGAAacGCGGCGG-GcGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 43293 0.67 0.512312
Target:  5'- cGACGCUUgcuCGUacauCCCGCGaaUCGCCu -3'
miRNA:   3'- aCUGUGAAac-GCGgc--GGGCGC--AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 42266 0.66 0.543373
Target:  5'- gGGCGagugUGCGCCGgUCGUcgagGUCGUCa -3'
miRNA:   3'- aCUGUgaa-ACGCGGCgGGCG----CAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.