miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24826 5' -58.4 NC_005284.1 + 6541 0.66 0.575026
Target:  5'- cGGCAac--GCGCCGUCaGCGUCaGUCu -3'
miRNA:   3'- aCUGUgaaaCGCGGCGGgCGCAG-CGG- -5'
24826 5' -58.4 NC_005284.1 + 33207 0.67 0.462295
Target:  5'- cGGCAUgccgcUGCGCgucgaaCGCCCGCG-CgGCCu -3'
miRNA:   3'- aCUGUGaa---ACGCG------GCGGGCGCaG-CGG- -5'
24826 5' -58.4 NC_005284.1 + 11416 0.68 0.452599
Target:  5'- uUGACGCgcUGCGUCGaUCGCGaaaacCGCCu -3'
miRNA:   3'- -ACUGUGaaACGCGGCgGGCGCa----GCGG- -5'
24826 5' -58.4 NC_005284.1 + 44334 1.12 0.000302
Target:  5'- aUGACACUUUGCGCCGCCCGCGUCGCCa -3'
miRNA:   3'- -ACUGUGAAACGCGGCGGGCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 26771 0.66 0.56442
Target:  5'- cUGGCGCUgcaaccaUGUCGCCCGCGggauagaGCUg -3'
miRNA:   3'- -ACUGUGAaac----GCGGCGGGCGCag-----CGG- -5'
24826 5' -58.4 NC_005284.1 + 41802 0.66 0.558081
Target:  5'- cGACGCgguugUUGuCGCCGCCacuuccgcugggugGC-UCGCCc -3'
miRNA:   3'- aCUGUGa----AAC-GCGGCGGg-------------CGcAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 45005 0.66 0.540237
Target:  5'- uUGGCGC---GCGCCGUUgcgacgugagcuugCGcCGUCGCCu -3'
miRNA:   3'- -ACUGUGaaaCGCGGCGG--------------GC-GCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 27105 0.66 0.522589
Target:  5'- aGGCA----GCGgCGaCCCGCG-CGCCa -3'
miRNA:   3'- aCUGUgaaaCGCgGC-GGGCGCaGCGG- -5'
24826 5' -58.4 NC_005284.1 + 6774 0.67 0.512312
Target:  5'- cGACACggucacGCGCgucaCGCCCGCGaauucCGCa -3'
miRNA:   3'- aCUGUGaaa---CGCG----GCGGGCGCa----GCGg -5'
24826 5' -58.4 NC_005284.1 + 33460 0.67 0.462295
Target:  5'- cGACACgc-GCcCCGCCa--GUCGCCc -3'
miRNA:   3'- aCUGUGaaaCGcGGCGGgcgCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 8127 0.67 0.502119
Target:  5'- cUGuCGCUUgccguuCGCCgucuuGCCgCGUGUCGCCa -3'
miRNA:   3'- -ACuGUGAAac----GCGG-----CGG-GCGCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 51226 0.67 0.512312
Target:  5'- aGGCACggaccUUGUaGCCGCCUuuaccguucuuGCGUUGCa -3'
miRNA:   3'- aCUGUGa----AACG-CGGCGGG-----------CGCAGCGg -5'
24826 5' -58.4 NC_005284.1 + 272 0.66 0.575026
Target:  5'- cGGCGCaagaUGCGCUGCCUGaucuuGUC-CCa -3'
miRNA:   3'- aCUGUGaa--ACGCGGCGGGCg----CAGcGG- -5'
24826 5' -58.4 NC_005284.1 + 5896 0.67 0.482008
Target:  5'- cGACACcUU-CGCCGCCgGgCGUguccacggCGCCg -3'
miRNA:   3'- aCUGUGaAAcGCGGCGGgC-GCA--------GCGG- -5'
24826 5' -58.4 NC_005284.1 + 50307 0.66 0.575026
Target:  5'- cGGCGCUac-CGCCGCC-GCGa-GCCa -3'
miRNA:   3'- aCUGUGAaacGCGGCGGgCGCagCGG- -5'
24826 5' -58.4 NC_005284.1 + 23366 0.66 0.522589
Target:  5'- cGGCGCa---CGUCGCCCGCGaacuggCGCa -3'
miRNA:   3'- aCUGUGaaacGCGGCGGGCGCa-----GCGg -5'
24826 5' -58.4 NC_005284.1 + 33656 0.67 0.466205
Target:  5'- -cACGCgugaaGCGCUgGCCCGCGuacacgucuuucguaUCGCCg -3'
miRNA:   3'- acUGUGaaa--CGCGG-CGGGCGC---------------AGCGG- -5'
24826 5' -58.4 NC_005284.1 + 53955 0.68 0.452599
Target:  5'- cGGCGCUUgccggUGCGCUuguugagccaGCCgaaCGUCGCCa -3'
miRNA:   3'- aCUGUGAA-----ACGCGG----------CGGgc-GCAGCGG- -5'
24826 5' -58.4 NC_005284.1 + 30215 0.66 0.575026
Target:  5'- gUGcCACUgcgUGUaGCCGUCgGCGUCggucugGCCg -3'
miRNA:   3'- -ACuGUGAa--ACG-CGGCGGgCGCAG------CGG- -5'
24826 5' -58.4 NC_005284.1 + 22105 0.66 0.553867
Target:  5'- uUGGCGC-UUGCGguCCGCUgGCcccCGCCg -3'
miRNA:   3'- -ACUGUGaAACGC--GGCGGgCGca-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.