miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24828 3' -57.8 NC_005284.1 + 10383 0.66 0.593031
Target:  5'- uGAGCggcUGCgCacgaagcaagaGGCGUCGCGGGCGGCc -3'
miRNA:   3'- -CUCGa--ACGgG-----------CUGCGGCGCUUGCUGu -5'
24828 3' -57.8 NC_005284.1 + 12349 0.66 0.539641
Target:  5'- cGGCUUcGCgCGAuuCGCCGCGggUGGg- -3'
miRNA:   3'- cUCGAA-CGgGCU--GCGGCGCuuGCUgu -5'
24828 3' -57.8 NC_005284.1 + 14523 0.67 0.518722
Target:  5'- cAGCcauCgCCGACGCUGCGGguggGCGACAu -3'
miRNA:   3'- cUCGaacG-GGCUGCGGCGCU----UGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 14634 0.66 0.571523
Target:  5'- -cGCUacCUCGACGCCGUGAAuuuuccggcCGGCAa -3'
miRNA:   3'- cuCGAacGGGCUGCGGCGCUU---------GCUGU- -5'
24828 3' -57.8 NC_005284.1 + 19173 0.66 0.571523
Target:  5'- cGAGCUUG-UCGGCGCUGU---CGACAg -3'
miRNA:   3'- -CUCGAACgGGCUGCGGCGcuuGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 19241 0.68 0.458112
Target:  5'- aGGCUcuucgGCUCGACcUCGCGAccGCGACAc -3'
miRNA:   3'- cUCGAa----CGGGCUGcGGCGCU--UGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 20819 0.68 0.438755
Target:  5'- cGAGCa-GCCCGcagcaGCGCCggccgacgaGCGGGCGGCGc -3'
miRNA:   3'- -CUCGaaCGGGC-----UGCGG---------CGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 21643 0.66 0.582256
Target:  5'- cGAGCagcGUgCGAuCGCCGCGcACGAUg -3'
miRNA:   3'- -CUCGaa-CGgGCU-GCGGCGCuUGCUGu -5'
24828 3' -57.8 NC_005284.1 + 21823 0.72 0.276758
Target:  5'- cGGCgUGCCCGGCGCuuccagcgccgccggCGUGGGCGAUg -3'
miRNA:   3'- cUCGaACGGGCUGCG---------------GCGCUUGCUGu -5'
24828 3' -57.8 NC_005284.1 + 23345 0.67 0.498132
Target:  5'- uGGGg--GCCCGgcGCGCCGC-AGCGGCGc -3'
miRNA:   3'- -CUCgaaCGGGC--UGCGGCGcUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 27989 0.67 0.528098
Target:  5'- -cGCUcGCgCGAUGuugcagcucuaucCCGCGGGCGACAu -3'
miRNA:   3'- cuCGAaCGgGCUGC-------------GGCGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 31413 0.67 0.508383
Target:  5'- uGGGCUUGCgCCa--GuUCGCGGGCGACGu -3'
miRNA:   3'- -CUCGAACG-GGcugC-GGCGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 33544 0.67 0.529143
Target:  5'- aAGCUca-CCGcCGCCGCGAGCuGAUAu -3'
miRNA:   3'- cUCGAacgGGCuGCGGCGCUUG-CUGU- -5'
24828 3' -57.8 NC_005284.1 + 33623 0.75 0.167093
Target:  5'- uGAGCcgUUGCUCGA-GCCGCGcGCGGCAu -3'
miRNA:   3'- -CUCG--AACGGGCUgCGGCGCuUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 39231 0.67 0.487975
Target:  5'- -uGCUgcGCUCGAuCGUCGUGAGCGugGu -3'
miRNA:   3'- cuCGAa-CGGGCU-GCGGCGCUUGCugU- -5'
24828 3' -57.8 NC_005284.1 + 39438 0.67 0.518722
Target:  5'- cGAGCcaucgGCCUGcACGCCGa--GCGACAc -3'
miRNA:   3'- -CUCGaa---CGGGC-UGCGGCgcuUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 42801 1.07 0.000714
Target:  5'- uGAGCUUGCCCGACGCCGCGAACGACAc -3'
miRNA:   3'- -CUCGAACGGGCUGCGGCGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 43607 0.69 0.419875
Target:  5'- aGGCUUGCuuuCCGcGCGCgGCGGccGCGGCGc -3'
miRNA:   3'- cUCGAACG---GGC-UGCGgCGCU--UGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 44633 0.69 0.392498
Target:  5'- cGAGCgcaucaucgUGCCCGuACG-CGCGAGCGcCGu -3'
miRNA:   3'- -CUCGa--------ACGGGC-UGCgGCGCUUGCuGU- -5'
24828 3' -57.8 NC_005284.1 + 44776 0.66 0.581181
Target:  5'- cGGCUUGCgCaAgGCCGCGGuccgucucggccaGCGACGc -3'
miRNA:   3'- cUCGAACGgGcUgCGGCGCU-------------UGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.