miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24828 3' -57.8 NC_005284.1 + 930 0.66 0.539641
Target:  5'- -cGCUgUGCUCGAUGCUgaacugGCGGGCGAUc -3'
miRNA:   3'- cuCGA-ACGGGCUGCGG------CGCUUGCUGu -5'
24828 3' -57.8 NC_005284.1 + 1000 0.66 0.571523
Target:  5'- aGGuCUUucGCCCGGCGCgGCuGAugGugAa -3'
miRNA:   3'- cUC-GAA--CGGGCUGCGgCG-CUugCugU- -5'
24828 3' -57.8 NC_005284.1 + 5400 0.68 0.46796
Target:  5'- -uGCUUGCCCGugcggcGCGCCagcucGCGcuCGGCGa -3'
miRNA:   3'- cuCGAACGGGC------UGCGG-----CGCuuGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 5875 0.67 0.498132
Target:  5'- cAGCUU-CUCGAgGCgGCGcAGCGACAc -3'
miRNA:   3'- cUCGAAcGGGCUgCGgCGC-UUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 6323 0.66 0.550208
Target:  5'- cGAGUaUGCgcauUCGAuuuCGCCGCGAuguCGACAg -3'
miRNA:   3'- -CUCGaACG----GGCU---GCGGCGCUu--GCUGU- -5'
24828 3' -57.8 NC_005284.1 + 6998 0.69 0.401495
Target:  5'- -cGCUcGCCCGuCGCCuccGCGAGCGcCGc -3'
miRNA:   3'- cuCGAaCGGGCuGCGG---CGCUUGCuGU- -5'
24828 3' -57.8 NC_005284.1 + 7090 0.67 0.508383
Target:  5'- cGAGCgcgcgUGCCCuuccuUGCCGUcAGCGGCAu -3'
miRNA:   3'- -CUCGa----ACGGGcu---GCGGCGcUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 7427 0.66 0.571523
Target:  5'- aGGGCggGCagucggaagaaaUCGACGCgacgacguuCGCGAGCGACGa -3'
miRNA:   3'- -CUCGaaCG------------GGCUGCG---------GCGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 7491 0.69 0.382755
Target:  5'- cGGCUUGCCCGAU-CCGgGcgaauucucggucGACGGCAa -3'
miRNA:   3'- cUCGAACGGGCUGcGGCgC-------------UUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 7709 0.69 0.392498
Target:  5'- uGAGCggUGCgCCGAagcucgugcCGCCGCcGGCGGCGu -3'
miRNA:   3'- -CUCGa-ACG-GGCU---------GCGGCGcUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 7710 0.66 0.571523
Target:  5'- --cCUUGCCCGAUGCCcCGua-GACGu -3'
miRNA:   3'- cucGAACGGGCUGCGGcGCuugCUGU- -5'
24828 3' -57.8 NC_005284.1 + 8205 0.66 0.582256
Target:  5'- cGGCgUUGCCCacuGCGCCGCcaugcuCGGCAa -3'
miRNA:   3'- cUCG-AACGGGc--UGCGGCGcuu---GCUGU- -5'
24828 3' -57.8 NC_005284.1 + 8436 0.67 0.529143
Target:  5'- cGAGaugGUCCGGCGagcCCGCG-ACGGCGg -3'
miRNA:   3'- -CUCgaaCGGGCUGC---GGCGCuUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 8677 0.68 0.46796
Target:  5'- -cGUUUGCCuCGaACGCCGCaAGCGuGCAg -3'
miRNA:   3'- cuCGAACGG-GC-UGCGGCGcUUGC-UGU- -5'
24828 3' -57.8 NC_005284.1 + 8756 0.72 0.254049
Target:  5'- aGGCcUGCUCGACGCC-CG-GCGACAg -3'
miRNA:   3'- cUCGaACGGGCUGCGGcGCuUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 9336 0.67 0.512508
Target:  5'- cGAGCaacuggucGCCCGAcaaucgcgaCGCCGCGAauaucgucgccggccGCGACu -3'
miRNA:   3'- -CUCGaa------CGGGCU---------GCGGCGCU---------------UGCUGu -5'
24828 3' -57.8 NC_005284.1 + 9611 0.67 0.488986
Target:  5'- cGAGCgucuucacgaucuccUGCCCGACGUCGCcguGCGuCGa -3'
miRNA:   3'- -CUCGa--------------ACGGGCUGCGGCGcu-UGCuGU- -5'
24828 3' -57.8 NC_005284.1 + 9843 0.67 0.484946
Target:  5'- cGGGCacGCCCuACGCgGCGAucaucgcucgcgagACGGCAg -3'
miRNA:   3'- -CUCGaaCGGGcUGCGgCGCU--------------UGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 9887 0.66 0.560838
Target:  5'- -cGCacccGCCCGGauaGuuGUGAGCGACGg -3'
miRNA:   3'- cuCGaa--CGGGCUg--CggCGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 10072 0.71 0.28093
Target:  5'- cGAGCggaacGCgCGGCGaCCGCGAccGCGGCGg -3'
miRNA:   3'- -CUCGaa---CGgGCUGC-GGCGCU--UGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.