miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24828 3' -57.8 NC_005284.1 + 42801 1.07 0.000714
Target:  5'- uGAGCUUGCCCGACGCCGCGAACGACAc -3'
miRNA:   3'- -CUCGAACGGGCUGCGGCGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 33623 0.75 0.167093
Target:  5'- uGAGCcgUUGCUCGA-GCCGCGcGCGGCAu -3'
miRNA:   3'- -CUCG--AACGGGCUgCGGCGCuUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 45348 0.73 0.229316
Target:  5'- cGGCaauccGCCCG--GCCGCGAGCGACAc -3'
miRNA:   3'- cUCGaa---CGGGCugCGGCGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 45621 0.73 0.229316
Target:  5'- uGAGCUgcgccgaacucuUGCCC-AUGCCGCGcGCGAUAg -3'
miRNA:   3'- -CUCGA------------ACGGGcUGCGGCGCuUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 8756 0.72 0.254049
Target:  5'- aGGCcUGCUCGACGCC-CG-GCGACAg -3'
miRNA:   3'- cUCGaACGGGCUGCGGcGCuUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 21823 0.72 0.276758
Target:  5'- cGGCgUGCCCGGCGCuuccagcgccgccggCGUGGGCGAUg -3'
miRNA:   3'- cUCGaACGGGCUGCG---------------GCGCUUGCUGu -5'
24828 3' -57.8 NC_005284.1 + 10072 0.71 0.28093
Target:  5'- cGAGCggaacGCgCGGCGaCCGCGAccGCGGCGg -3'
miRNA:   3'- -CUCGaa---CGgGCUGC-GGCGCU--UGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 7491 0.69 0.382755
Target:  5'- cGGCUUGCCCGAU-CCGgGcgaauucucggucGACGGCAa -3'
miRNA:   3'- cUCGAACGGGCUGcGGCgC-------------UUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 44633 0.69 0.392498
Target:  5'- cGAGCgcaucaucgUGCCCGuACG-CGCGAGCGcCGu -3'
miRNA:   3'- -CUCGa--------ACGGGC-UGCgGCGCUUGCuGU- -5'
24828 3' -57.8 NC_005284.1 + 7709 0.69 0.392498
Target:  5'- uGAGCggUGCgCCGAagcucgugcCGCCGCcGGCGGCGu -3'
miRNA:   3'- -CUCGa-ACG-GGCU---------GCGGCGcUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 6998 0.69 0.401495
Target:  5'- -cGCUcGCCCGuCGCCuccGCGAGCGcCGc -3'
miRNA:   3'- cuCGAaCGGGCuGCGG---CGCUUGCuGU- -5'
24828 3' -57.8 NC_005284.1 + 43607 0.69 0.419875
Target:  5'- aGGCUUGCuuuCCGcGCGCgGCGGccGCGGCGc -3'
miRNA:   3'- cUCGAACG---GGC-UGCGgCGCU--UGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 51395 0.68 0.429254
Target:  5'- cAGCggGCUCGACGCgGCGGAagugcgGGCAc -3'
miRNA:   3'- cUCGaaCGGGCUGCGgCGCUUg-----CUGU- -5'
24828 3' -57.8 NC_005284.1 + 45026 0.68 0.429254
Target:  5'- uGAGCUUGCgCCGuCGCCucgaccgcccGCGcuuCGGCAa -3'
miRNA:   3'- -CUCGAACG-GGCuGCGG----------CGCuu-GCUGU- -5'
24828 3' -57.8 NC_005284.1 + 20819 0.68 0.438755
Target:  5'- cGAGCa-GCCCGcagcaGCGCCggccgacgaGCGGGCGGCGc -3'
miRNA:   3'- -CUCGaaCGGGC-----UGCGG---------CGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 19241 0.68 0.458112
Target:  5'- aGGCUcuucgGCUCGACcUCGCGAccGCGACAc -3'
miRNA:   3'- cUCGAa----CGGGCUGcGGCGCU--UGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 47676 0.68 0.46796
Target:  5'- aGGCgUUGaUCGAUGCCGCuGACGGCAa -3'
miRNA:   3'- cUCG-AACgGGCUGCGGCGcUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 5400 0.68 0.46796
Target:  5'- -uGCUUGCCCGugcggcGCGCCagcucGCGcuCGGCGa -3'
miRNA:   3'- cuCGAACGGGC------UGCGG-----CGCuuGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 8677 0.68 0.46796
Target:  5'- -cGUUUGCCuCGaACGCCGCaAGCGuGCAg -3'
miRNA:   3'- cuCGAACGG-GC-UGCGGCGcUUGC-UGU- -5'
24828 3' -57.8 NC_005284.1 + 45894 0.67 0.477915
Target:  5'- cGAGCgguUG-CCGugGUCGCGcGCGAUg -3'
miRNA:   3'- -CUCGa--ACgGGCugCGGCGCuUGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.