miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24828 3' -57.8 NC_005284.1 + 54459 0.66 0.582256
Target:  5'- -----aGUCCGACGCgGUGcGCGGCAa -3'
miRNA:   3'- cucgaaCGGGCUGCGgCGCuUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 14523 0.67 0.518722
Target:  5'- cAGCcauCgCCGACGCUGCGGguggGCGACAu -3'
miRNA:   3'- cUCGaacG-GGCUGCGGCGCU----UGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 27989 0.67 0.528098
Target:  5'- -cGCUcGCgCGAUGuugcagcucuaucCCGCGGGCGACAu -3'
miRNA:   3'- cuCGAaCGgGCUGC-------------GGCGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 8436 0.67 0.529143
Target:  5'- cGAGaugGUCCGGCGagcCCGCG-ACGGCGg -3'
miRNA:   3'- -CUCgaaCGGGCUGC---GGCGCuUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 12349 0.66 0.539641
Target:  5'- cGGCUUcGCgCGAuuCGCCGCGggUGGg- -3'
miRNA:   3'- cUCGAA-CGgGCU--GCGGCGCuuGCUgu -5'
24828 3' -57.8 NC_005284.1 + 6323 0.66 0.550208
Target:  5'- cGAGUaUGCgcauUCGAuuuCGCCGCGAuguCGACAg -3'
miRNA:   3'- -CUCGaACG----GGCU---GCGGCGCUu--GCUGU- -5'
24828 3' -57.8 NC_005284.1 + 1000 0.66 0.571523
Target:  5'- aGGuCUUucGCCCGGCGCgGCuGAugGugAa -3'
miRNA:   3'- cUC-GAA--CGGGCUGCGgCG-CUugCugU- -5'
24828 3' -57.8 NC_005284.1 + 14634 0.66 0.571523
Target:  5'- -cGCUacCUCGACGCCGUGAAuuuuccggcCGGCAa -3'
miRNA:   3'- cuCGAacGGGCUGCGGCGCUU---------GCUGU- -5'
24828 3' -57.8 NC_005284.1 + 7427 0.66 0.571523
Target:  5'- aGGGCggGCagucggaagaaaUCGACGCgacgacguuCGCGAGCGACGa -3'
miRNA:   3'- -CUCGaaCG------------GGCUGCG---------GCGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 49158 0.67 0.518722
Target:  5'- aGGCggacggGCCCGGCGagGCGAugGAgGa -3'
miRNA:   3'- cUCGaa----CGGGCUGCggCGCUugCUgU- -5'
24828 3' -57.8 NC_005284.1 + 31413 0.67 0.508383
Target:  5'- uGGGCUUGCgCCa--GuUCGCGGGCGACGu -3'
miRNA:   3'- -CUCGAACG-GGcugC-GGCGCUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 46499 0.67 0.487975
Target:  5'- -uGCaUGgCCGACGCCGCacgGGACGGa- -3'
miRNA:   3'- cuCGaACgGGCUGCGGCG---CUUGCUgu -5'
24828 3' -57.8 NC_005284.1 + 10072 0.71 0.28093
Target:  5'- cGAGCggaacGCgCGGCGaCCGCGAccGCGGCGg -3'
miRNA:   3'- -CUCGaa---CGgGCUGC-GGCGCU--UGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 7491 0.69 0.382755
Target:  5'- cGGCUUGCCCGAU-CCGgGcgaauucucggucGACGGCAa -3'
miRNA:   3'- cUCGAACGGGCUGcGGCgC-------------UUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 7709 0.69 0.392498
Target:  5'- uGAGCggUGCgCCGAagcucgugcCGCCGCcGGCGGCGu -3'
miRNA:   3'- -CUCGa-ACG-GGCU---------GCGGCGcUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 51395 0.68 0.429254
Target:  5'- cAGCggGCUCGACGCgGCGGAagugcgGGCAc -3'
miRNA:   3'- cUCGaaCGGGCUGCGgCGCUUg-----CUGU- -5'
24828 3' -57.8 NC_005284.1 + 47676 0.68 0.46796
Target:  5'- aGGCgUUGaUCGAUGCCGCuGACGGCAa -3'
miRNA:   3'- cUCG-AACgGGCUGCGGCGcUUGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 8677 0.68 0.46796
Target:  5'- -cGUUUGCCuCGaACGCCGCaAGCGuGCAg -3'
miRNA:   3'- cuCGAACGG-GC-UGCGGCGcUUGC-UGU- -5'
24828 3' -57.8 NC_005284.1 + 9843 0.67 0.484946
Target:  5'- cGGGCacGCCCuACGCgGCGAucaucgcucgcgagACGGCAg -3'
miRNA:   3'- -CUCGaaCGGGcUGCGgCGCU--------------UGCUGU- -5'
24828 3' -57.8 NC_005284.1 + 39231 0.67 0.487975
Target:  5'- -uGCUgcGCUCGAuCGUCGUGAGCGugGu -3'
miRNA:   3'- cuCGAa-CGGGCU-GCGGCGCUUGCugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.