miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24830 3' -59.8 NC_005284.1 + 8356 0.66 0.512608
Target:  5'- uGCGGauCugCA-UGCGGCGauGAUCGCGg -3'
miRNA:   3'- -CGCU--GugGUgACGCCGCgcCUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 12676 0.66 0.512608
Target:  5'- gGCGACgGCUACacccaGCGGgcCGCGGACgGCc -3'
miRNA:   3'- -CGCUG-UGGUGa----CGCC--GCGCCUGgUGc -5'
24830 3' -59.8 NC_005284.1 + 16100 0.66 0.512608
Target:  5'- uCGGCGCCGCacucguUGCcguuGGCGCGGugGCgACGu -3'
miRNA:   3'- cGCUGUGGUG------ACG----CCGCGCC--UGgUGC- -5'
24830 3' -59.8 NC_005284.1 + 19745 0.66 0.49261
Target:  5'- aCGACA-CGCUGUGGC-CGGAUCGu- -3'
miRNA:   3'- cGCUGUgGUGACGCCGcGCCUGGUgc -5'
24830 3' -59.8 NC_005284.1 + 38493 0.66 0.49162
Target:  5'- aGCGGCACCGgcucgccCUGCGcaGCGCuGuuCACGg -3'
miRNA:   3'- -CGCUGUGGU-------GACGC--CGCGcCugGUGC- -5'
24830 3' -59.8 NC_005284.1 + 21833 0.66 0.472979
Target:  5'- gGCGcuuccaGCGCCGC--CGGCGUGGGCgAUGg -3'
miRNA:   3'- -CGC------UGUGGUGacGCCGCGCCUGgUGC- -5'
24830 3' -59.8 NC_005284.1 + 47685 0.67 0.45375
Target:  5'- uCGAUGCCGCUGaCGGCaaGGAagggCACGc -3'
miRNA:   3'- cGCUGUGGUGAC-GCCGcgCCUg---GUGC- -5'
24830 3' -59.8 NC_005284.1 + 33151 0.67 0.45375
Target:  5'- gGCGAuCGCaCGCUGCucGGCGUcGAgCGCGg -3'
miRNA:   3'- -CGCU-GUG-GUGACG--CCGCGcCUgGUGC- -5'
24830 3' -59.8 NC_005284.1 + 35540 0.67 0.452799
Target:  5'- aCGACGCCGCgacGCguccguucagaucGGCGUaGGACUGCGc -3'
miRNA:   3'- cGCUGUGGUGa--CG-------------CCGCG-CCUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 8280 0.67 0.444296
Target:  5'- --cGCACCAUccgucccgUGCGGCGUcGGCCAUGc -3'
miRNA:   3'- cgcUGUGGUG--------ACGCCGCGcCUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 24626 0.67 0.444296
Target:  5'- aCGuCACCugUGCGGCGaacuGACCGu- -3'
miRNA:   3'- cGCuGUGGugACGCCGCgc--CUGGUgc -5'
24830 3' -59.8 NC_005284.1 + 15592 0.67 0.444296
Target:  5'- cGCGGaAUCG-UGCaGCGUGGACUACGg -3'
miRNA:   3'- -CGCUgUGGUgACGcCGCGCCUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 6590 0.67 0.434953
Target:  5'- cGCGugGCCGCUGCGcGaGCuGucACCGCa -3'
miRNA:   3'- -CGCugUGGUGACGC-CgCGcC--UGGUGc -5'
24830 3' -59.8 NC_005284.1 + 8864 0.67 0.434953
Target:  5'- cGCGAUugCgcagaacgacguGCUGCGcaucGCGCGcGACaCACGg -3'
miRNA:   3'- -CGCUGugG------------UGACGC----CGCGC-CUG-GUGC- -5'
24830 3' -59.8 NC_005284.1 + 10083 0.67 0.434953
Target:  5'- cGCGGCgACCGCgaccGCGGCGgGucugaaGACgGCGa -3'
miRNA:   3'- -CGCUG-UGGUGa---CGCCGCgC------CUGgUGC- -5'
24830 3' -59.8 NC_005284.1 + 50116 0.67 0.425725
Target:  5'- cGCGGCgAUCGCgcacGCGGCGUucGCCAUGg -3'
miRNA:   3'- -CGCUG-UGGUGa---CGCCGCGccUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 47742 0.67 0.416615
Target:  5'- uCGGCGgUACgGCGGCGCGcGuacguCCGCGu -3'
miRNA:   3'- cGCUGUgGUGaCGCCGCGC-Cu----GGUGC- -5'
24830 3' -59.8 NC_005284.1 + 45191 0.67 0.416615
Target:  5'- aGCuuCGCCGCcGCGGCaGCGcGAUCGCc -3'
miRNA:   3'- -CGcuGUGGUGaCGCCG-CGC-CUGGUGc -5'
24830 3' -59.8 NC_005284.1 + 19462 0.68 0.407624
Target:  5'- uGCGGCAggCGCUGauCGGUGCGGGCuggauCACGa -3'
miRNA:   3'- -CGCUGUg-GUGAC--GCCGCGCCUG-----GUGC- -5'
24830 3' -59.8 NC_005284.1 + 48181 0.68 0.406732
Target:  5'- aGUGACGCCcguUGCGGUgacagcucgcgcaGCGG-CCACGc -3'
miRNA:   3'- -CGCUGUGGug-ACGCCG-------------CGCCuGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.