miRNA display CGI


Results 41 - 54 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24830 3' -59.8 NC_005284.1 + 5927 0.71 0.255033
Target:  5'- aCGACGCCGagaugcagGCGGCaguuGCGGacGCCACGg -3'
miRNA:   3'- cGCUGUGGUga------CGCCG----CGCC--UGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 44762 0.71 0.248782
Target:  5'- cGCGACAUCACgcuCGGCuuGCGcaaGGCCGCGg -3'
miRNA:   3'- -CGCUGUGGUGac-GCCG--CGC---CUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 44703 0.71 0.248782
Target:  5'- -aGAC-CCGCcGCGGuCGCGGucGCCGCGc -3'
miRNA:   3'- cgCUGuGGUGaCGCC-GCGCC--UGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 46033 0.72 0.227326
Target:  5'- cCGaACGCCGCUGCGGCggcuugugcguauucGCGGAUCGa- -3'
miRNA:   3'- cGC-UGUGGUGACGCCG---------------CGCCUGGUgc -5'
24830 3' -59.8 NC_005284.1 + 38903 0.72 0.225041
Target:  5'- cGCGcGCACCGCcucUGCGGCGaCGaGACgGCa -3'
miRNA:   3'- -CGC-UGUGGUG---ACGCCGC-GC-CUGgUGc -5'
24830 3' -59.8 NC_005284.1 + 54580 0.72 0.219414
Target:  5'- cGUGACugucGCCACUGCGGUu--GACCACGu -3'
miRNA:   3'- -CGCUG----UGGUGACGCCGcgcCUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 9236 0.72 0.218858
Target:  5'- gGCGACgcGCCACgcgGCGGCauagagcGCGGAgCAUGc -3'
miRNA:   3'- -CGCUG--UGGUGa--CGCCG-------CGCCUgGUGC- -5'
24830 3' -59.8 NC_005284.1 + 36688 0.72 0.20325
Target:  5'- cGCGAUACUGCUGCGcCGCGaGCuCGCGg -3'
miRNA:   3'- -CGCUGUGGUGACGCcGCGCcUG-GUGC- -5'
24830 3' -59.8 NC_005284.1 + 39480 0.72 0.20325
Target:  5'- cGCGAUGCCGCUGCGcccgcacaucGUGCGGuCCuCGu -3'
miRNA:   3'- -CGCUGUGGUGACGC----------CGCGCCuGGuGC- -5'
24830 3' -59.8 NC_005284.1 + 20139 0.74 0.169515
Target:  5'- aCGuCAUCACUGCGGCaGacguggaGGGCCGCGa -3'
miRNA:   3'- cGCuGUGGUGACGCCG-Cg------CCUGGUGC- -5'
24830 3' -59.8 NC_005284.1 + 47992 0.75 0.140878
Target:  5'- uCGACGCCAUUGCGGaauuCGCGGGCgugaCGCGc -3'
miRNA:   3'- cGCUGUGGUGACGCC----GCGCCUG----GUGC- -5'
24830 3' -59.8 NC_005284.1 + 21526 0.77 0.101637
Target:  5'- cGCGGCAgcaucgcCCACUGCGGagGCGGugCGCc -3'
miRNA:   3'- -CGCUGU-------GGUGACGCCg-CGCCugGUGc -5'
24830 3' -59.8 NC_005284.1 + 31433 0.81 0.046478
Target:  5'- gGCGACgugcGCCGCUGCGGCGCGccgggcccccaauuGACCGCc -3'
miRNA:   3'- -CGCUG----UGGUGACGCCGCGC--------------CUGGUGc -5'
24830 3' -59.8 NC_005284.1 + 42512 1.1 0.000339
Target:  5'- uGCGACACCACUGCGGCGCGGACCACGa -3'
miRNA:   3'- -CGCUGUGGUGACGCCGCGCCUGGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.