miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24832 3' -59.4 NC_005284.1 + 2355 0.69 0.326537
Target:  5'- gGGCGGUAUGGGgucauCGAGCGGAGAg -3'
miRNA:   3'- -CCGCCGUGCCUgcugcGCUCGCCUUU- -5'
24832 3' -59.4 NC_005284.1 + 4393 0.69 0.342286
Target:  5'- aGUGGCACGGcacaACGGuuuCGuCGAGCGGGu- -3'
miRNA:   3'- cCGCCGUGCC----UGCU---GC-GCUCGCCUuu -5'
24832 3' -59.4 NC_005284.1 + 4635 0.68 0.401618
Target:  5'- cGGuCGGCA---GCGGCGUGAGCGGc-- -3'
miRNA:   3'- -CC-GCCGUgccUGCUGCGCUCGCCuuu -5'
24832 3' -59.4 NC_005284.1 + 8079 0.68 0.370297
Target:  5'- cGGCGGCuauucuCGGACGAcgaugcaaccgcgguCGCG-GCGGc-- -3'
miRNA:   3'- -CCGCCGu-----GCCUGCU---------------GCGCuCGCCuuu -5'
24832 3' -59.4 NC_005284.1 + 8342 0.67 0.467089
Target:  5'- cGGCGGCAuuCGG-CGACGgCGAuCGGu-- -3'
miRNA:   3'- -CCGCCGU--GCCuGCUGC-GCUcGCCuuu -5'
24832 3' -59.4 NC_005284.1 + 8642 0.71 0.255921
Target:  5'- uGCGGUGCGcGACGGCGgGcgcacAGCGGAu- -3'
miRNA:   3'- cCGCCGUGC-CUGCUGCgC-----UCGCCUuu -5'
24832 3' -59.4 NC_005284.1 + 9213 0.73 0.187757
Target:  5'- aGGCGucgauagccgaguGCGCGGGCGACGCGccacgcGGCGGc-- -3'
miRNA:   3'- -CCGC-------------CGUGCCUGCUGCGC------UCGCCuuu -5'
24832 3' -59.4 NC_005284.1 + 9256 0.67 0.428972
Target:  5'- gGGCGGCACGGAU-ACGCuGuuCGaGAAAa -3'
miRNA:   3'- -CCGCCGUGCCUGcUGCG-CucGC-CUUU- -5'
24832 3' -59.4 NC_005284.1 + 9343 0.67 0.467089
Target:  5'- cGGCGaGU-CGGAUcaagcgacgGGCGCGAGCGcGAGg -3'
miRNA:   3'- -CCGC-CGuGCCUG---------CUGCGCUCGC-CUUu -5'
24832 3' -59.4 NC_005284.1 + 10415 0.7 0.29025
Target:  5'- gGGCGGCcgaugacgcgcaguCGGcauaucggaauuugGCGACGCGGGCGGc-- -3'
miRNA:   3'- -CCGCCGu-------------GCC--------------UGCUGCGCUCGCCuuu -5'
24832 3' -59.4 NC_005284.1 + 11172 0.67 0.419732
Target:  5'- cGCGcCGCGGcCGcCGCGcGCGGAAAg -3'
miRNA:   3'- cCGCcGUGCCuGCuGCGCuCGCCUUU- -5'
24832 3' -59.4 NC_005284.1 + 11863 0.66 0.506881
Target:  5'- aGGCcgacuGGCGCGu-CGGCGUGAaGCGGGc- -3'
miRNA:   3'- -CCG-----CCGUGCcuGCUGCGCU-CGCCUuu -5'
24832 3' -59.4 NC_005284.1 + 12382 0.68 0.364403
Target:  5'- uGGCGggaGCGCGGGaggaggggauucgcCGGCGCGcaacGGCGGGAu -3'
miRNA:   3'- -CCGC---CGUGCCU--------------GCUGCGC----UCGCCUUu -5'
24832 3' -59.4 NC_005284.1 + 13360 0.67 0.418814
Target:  5'- cGGCGGCaagcugACGGugGGCgGCGAucugucuGCGGc-- -3'
miRNA:   3'- -CCGCCG------UGCCugCUG-CGCU-------CGCCuuu -5'
24832 3' -59.4 NC_005284.1 + 16174 0.68 0.366921
Target:  5'- gGGCucGGCGCGucGAUGGCGCuGGGCGGc-- -3'
miRNA:   3'- -CCG--CCGUGC--CUGCUGCG-CUCGCCuuu -5'
24832 3' -59.4 NC_005284.1 + 17442 0.66 0.476891
Target:  5'- aGGUGGUACaGGAUcuCGCGAGCGu--- -3'
miRNA:   3'- -CCGCCGUG-CCUGcuGCGCUCGCcuuu -5'
24832 3' -59.4 NC_005284.1 + 19789 0.7 0.282552
Target:  5'- --gGGCAUGGACGGCaGCGcGGCGGcAGAu -3'
miRNA:   3'- ccgCCGUGCCUGCUG-CGC-UCGCC-UUU- -5'
24832 3' -59.4 NC_005284.1 + 21315 0.69 0.334343
Target:  5'- aGGCGGUucaauGCGGGCGAC-UG-GCGGGGc -3'
miRNA:   3'- -CCGCCG-----UGCCUGCUGcGCuCGCCUUu -5'
24832 3' -59.4 NC_005284.1 + 21570 0.72 0.225565
Target:  5'- aGGCcGCGCGGGCguucGACGCGcAGCGGc-- -3'
miRNA:   3'- -CCGcCGUGCCUG----CUGCGC-UCGCCuuu -5'
24832 3' -59.4 NC_005284.1 + 22076 0.74 0.160696
Target:  5'- uGCGGC-CGGACuGCGCGA-CGGAAAa -3'
miRNA:   3'- cCGCCGuGCCUGcUGCGCUcGCCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.