miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24832 3' -59.4 NC_005284.1 + 47580 0.67 0.419732
Target:  5'- uGGCGGUGCGuGACGcUGUugaGGCGGAAc -3'
miRNA:   3'- -CCGCCGUGC-CUGCuGCGc--UCGCCUUu -5'
24832 3' -59.4 NC_005284.1 + 47784 0.69 0.334343
Target:  5'- aGGCGGCgcucGCGGagGCGACggGCGAGCGc--- -3'
miRNA:   3'- -CCGCCG----UGCC--UGCUG--CGCUCGCcuuu -5'
24832 3' -59.4 NC_005284.1 + 12382 0.68 0.364403
Target:  5'- uGGCGggaGCGCGGGaggaggggauucgcCGGCGCGcaacGGCGGGAu -3'
miRNA:   3'- -CCGC---CGUGCCU--------------GCUGCGC----UCGCCUUu -5'
24832 3' -59.4 NC_005284.1 + 16174 0.68 0.366921
Target:  5'- gGGCucGGCGCGucGAUGGCGCuGGGCGGc-- -3'
miRNA:   3'- -CCG--CCGUGC--CUGCUGCG-CUCGCCuuu -5'
24832 3' -59.4 NC_005284.1 + 8079 0.68 0.370297
Target:  5'- cGGCGGCuauucuCGGACGAcgaugcaaccgcgguCGCG-GCGGc-- -3'
miRNA:   3'- -CCGCCGu-----GCCUGCU---------------GCGCuCGCCuuu -5'
24832 3' -59.4 NC_005284.1 + 4635 0.68 0.401618
Target:  5'- cGGuCGGCA---GCGGCGUGAGCGGc-- -3'
miRNA:   3'- -CC-GCCGUgccUGCUGCGCUCGCCuuu -5'
24832 3' -59.4 NC_005284.1 + 13360 0.67 0.418814
Target:  5'- cGGCGGCaagcugACGGugGGCgGCGAucugucuGCGGc-- -3'
miRNA:   3'- -CCGCCG------UGCCugCUG-CGCU-------CGCCuuu -5'
24832 3' -59.4 NC_005284.1 + 11172 0.67 0.419732
Target:  5'- cGCGcCGCGGcCGcCGCGcGCGGAAAg -3'
miRNA:   3'- cCGCcGUGCCuGCuGCGCuCGCCUUU- -5'
24832 3' -59.4 NC_005284.1 + 22864 0.67 0.419732
Target:  5'- aGGCGGCGggaaGGGCGucgagcgcCGCGAGCuGAu- -3'
miRNA:   3'- -CCGCCGUg---CCUGCu-------GCGCUCGcCUuu -5'
24832 3' -59.4 NC_005284.1 + 21315 0.69 0.334343
Target:  5'- aGGCGGUucaauGCGGGCGAC-UG-GCGGGGc -3'
miRNA:   3'- -CCGCCG-----UGCCUGCUGcGCuCGCCUUu -5'
24832 3' -59.4 NC_005284.1 + 26309 0.69 0.326537
Target:  5'- uGCGGCGCG-----UGCGAGCGGAAAg -3'
miRNA:   3'- cCGCCGUGCcugcuGCGCUCGCCUUU- -5'
24832 3' -59.4 NC_005284.1 + 2355 0.69 0.326537
Target:  5'- gGGCGGUAUGGGgucauCGAGCGGAGAg -3'
miRNA:   3'- -CCGCCGUGCCUgcugcGCUCGCCUUU- -5'
24832 3' -59.4 NC_005284.1 + 21570 0.72 0.225565
Target:  5'- aGGCcGCGCGGGCguucGACGCGcAGCGGc-- -3'
miRNA:   3'- -CCGcCGUGCCUG----CUGCGC-UCGCCuuu -5'
24832 3' -59.4 NC_005284.1 + 45151 0.72 0.231382
Target:  5'- aGGCGuggucgacGCACGG-CGACGuCGGGCaGGAGAu -3'
miRNA:   3'- -CCGC--------CGUGCCuGCUGC-GCUCG-CCUUU- -5'
24832 3' -59.4 NC_005284.1 + 45652 0.71 0.243394
Target:  5'- uGGCGGCucguCGGugcGCGAgGCG-GUGGAAAu -3'
miRNA:   3'- -CCGCCGu---GCC---UGCUgCGCuCGCCUUU- -5'
24832 3' -59.4 NC_005284.1 + 8642 0.71 0.255921
Target:  5'- uGCGGUGCGcGACGGCGgGcgcacAGCGGAu- -3'
miRNA:   3'- cCGCCGUGC-CUGCUGCgC-----UCGCCUuu -5'
24832 3' -59.4 NC_005284.1 + 51732 0.71 0.261728
Target:  5'- cGCGuGUACGGaaagaucGCGGCGCGccuGCGGGAAg -3'
miRNA:   3'- cCGC-CGUGCC-------UGCUGCGCu--CGCCUUU- -5'
24832 3' -59.4 NC_005284.1 + 47743 0.7 0.273663
Target:  5'- cGGCGGUACGG-CGGCGCGcguacguccgcguaAGCaGAu- -3'
miRNA:   3'- -CCGCCGUGCCuGCUGCGC--------------UCGcCUuu -5'
24832 3' -59.4 NC_005284.1 + 19789 0.7 0.282552
Target:  5'- --gGGCAUGGACGGCaGCGcGGCGGcAGAu -3'
miRNA:   3'- ccgCCGUGCCUGCUG-CGC-UCGCC-UUU- -5'
24832 3' -59.4 NC_005284.1 + 10415 0.7 0.29025
Target:  5'- gGGCGGCcgaugacgcgcaguCGGcauaucggaauuugGCGACGCGGGCGGc-- -3'
miRNA:   3'- -CCGCCGu-------------GCC--------------UGCUGCGCUCGCCuuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.