miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24836 3' -53.5 NC_005284.1 + 10906 0.66 0.797335
Target:  5'- cCgGAGCGUuuCGCACAcgacGCGCgGAu-- -3'
miRNA:   3'- -GgUUCGCGuuGCGUGU----CGCGgCUuua -5'
24836 3' -53.5 NC_005284.1 + 14600 0.66 0.797335
Target:  5'- --cGGCGCGAaagUGUucCGGCGCCGAAc- -3'
miRNA:   3'- gguUCGCGUU---GCGu-GUCGCGGCUUua -5'
24836 3' -53.5 NC_005284.1 + 7957 0.66 0.797335
Target:  5'- aCgGAGgGCGACGacgaaACGGCGguuCCGAGAa -3'
miRNA:   3'- -GgUUCgCGUUGCg----UGUCGC---GGCUUUa -5'
24836 3' -53.5 NC_005284.1 + 46549 0.66 0.797335
Target:  5'- gCCGAGcCGCAGCGCG-AGCGaCaucaGGAAg -3'
miRNA:   3'- -GGUUC-GCGUUGCGUgUCGC-Gg---CUUUa -5'
24836 3' -53.5 NC_005284.1 + 44558 0.66 0.787343
Target:  5'- cCCAAGCGCcaccguGCcCACGGuCGCCaGAAu- -3'
miRNA:   3'- -GGUUCGCGu-----UGcGUGUC-GCGG-CUUua -5'
24836 3' -53.5 NC_005284.1 + 4469 0.66 0.787343
Target:  5'- gCCGAGCaaaagcuggcucGCGGCGgcggUAGCGCCGAAc- -3'
miRNA:   3'- -GGUUCG------------CGUUGCgu--GUCGCGGCUUua -5'
24836 3' -53.5 NC_005284.1 + 7790 0.66 0.785325
Target:  5'- aCCAAgGCGUGACGagccugcgugcaGCGGUGCUGAAc- -3'
miRNA:   3'- -GGUU-CGCGUUGCg-----------UGUCGCGGCUUua -5'
24836 3' -53.5 NC_005284.1 + 23350 0.66 0.777183
Target:  5'- gCCcGGCGCGcCGCAgCGGCGCaCGu--- -3'
miRNA:   3'- -GGuUCGCGUuGCGU-GUCGCG-GCuuua -5'
24836 3' -53.5 NC_005284.1 + 44958 0.66 0.777183
Target:  5'- -aGGGCGUgcccguGAUGCGC-GCGCCGAu-- -3'
miRNA:   3'- ggUUCGCG------UUGCGUGuCGCGGCUuua -5'
24836 3' -53.5 NC_005284.1 + 15896 0.66 0.777183
Target:  5'- -gAGGCGguGCGCGCgcuaucGGUGCUGAu-- -3'
miRNA:   3'- ggUUCGCguUGCGUG------UCGCGGCUuua -5'
24836 3' -53.5 NC_005284.1 + 15193 0.66 0.777183
Target:  5'- aCCAGuucGCGCucGCGUcggaggacuacGCAGCGgCCGAAGa -3'
miRNA:   3'- -GGUU---CGCGu-UGCG-----------UGUCGC-GGCUUUa -5'
24836 3' -53.5 NC_005284.1 + 46086 0.66 0.771011
Target:  5'- gUCGAGCGCGcgcaccgugaccugcACGCuuGCGGCGuUCGAGGc -3'
miRNA:   3'- -GGUUCGCGU---------------UGCG--UGUCGC-GGCUUUa -5'
24836 3' -53.5 NC_005284.1 + 6992 0.66 0.766866
Target:  5'- gCCAAGCGCu-CGCccgucgccuccGCgAGCGCCGc--- -3'
miRNA:   3'- -GGUUCGCGuuGCG-----------UG-UCGCGGCuuua -5'
24836 3' -53.5 NC_005284.1 + 24775 0.66 0.766866
Target:  5'- --cGGCGCAACGUGCgugagcgucAGUGCUGGAu- -3'
miRNA:   3'- gguUCGCGUUGCGUG---------UCGCGGCUUua -5'
24836 3' -53.5 NC_005284.1 + 2302 0.66 0.766866
Target:  5'- aUCucGCGUAACGCACuGGCGUCa---- -3'
miRNA:   3'- -GGuuCGCGUUGCGUG-UCGCGGcuuua -5'
24836 3' -53.5 NC_005284.1 + 27837 0.66 0.760605
Target:  5'- uCUAAGCGCugggagucgccagacGACGCGCcGCccggcgcaucGCCGAAAUc -3'
miRNA:   3'- -GGUUCGCG---------------UUGCGUGuCG----------CGGCUUUA- -5'
24836 3' -53.5 NC_005284.1 + 43617 0.66 0.756404
Target:  5'- uCCGcGCGCGGCGgcCGCGGCG-CGAGc- -3'
miRNA:   3'- -GGUuCGCGUUGC--GUGUCGCgGCUUua -5'
24836 3' -53.5 NC_005284.1 + 7307 0.66 0.756404
Target:  5'- gCAAGCGCAccaagGCGCAgGGaaccaagGUCGAGGUg -3'
miRNA:   3'- gGUUCGCGU-----UGCGUgUCg------CGGCUUUA- -5'
24836 3' -53.5 NC_005284.1 + 9224 0.67 0.750062
Target:  5'- gCCGAGUGCGcgggcgACGCGCcacgcggcggcauagAGCGCgGAGc- -3'
miRNA:   3'- -GGUUCGCGU------UGCGUG---------------UCGCGgCUUua -5'
24836 3' -53.5 NC_005284.1 + 18501 0.67 0.745809
Target:  5'- gCUcGGCGUgacgucgauuccGGCGUACGGCGUCGAu-- -3'
miRNA:   3'- -GGuUCGCG------------UUGCGUGUCGCGGCUuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.