miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24841 3' -63.3 NC_005284.1 + 23494 0.66 0.356832
Target:  5'- cGAu-CCGGCGUgGCGCGCgGACc-- -3'
miRNA:   3'- aCUccGGCCGCAgCGCGCGgCUGcag -5'
24841 3' -63.3 NC_005284.1 + 23453 0.66 0.356832
Target:  5'- gUGuu-CUGcGCGUCGCuCGCCGACGUUu -3'
miRNA:   3'- -ACuccGGC-CGCAGCGcGCGGCUGCAG- -5'
24841 3' -63.3 NC_005284.1 + 49565 0.66 0.356832
Target:  5'- -cAGGCgCGGCGUCGUaccGUugaccggauuGCCGACGa- -3'
miRNA:   3'- acUCCG-GCCGCAGCG---CG----------CGGCUGCag -5'
24841 3' -63.3 NC_005284.1 + 53693 0.66 0.356832
Target:  5'- -cGGGCaCGGCaa-GUGCGCUGGCGaUCu -3'
miRNA:   3'- acUCCG-GCCGcagCGCGCGGCUGC-AG- -5'
24841 3' -63.3 NC_005284.1 + 6788 0.66 0.348866
Target:  5'- aUGcGGCCGGCGUuugaUGCGuCGaUCGGCGa- -3'
miRNA:   3'- -ACuCCGGCCGCA----GCGC-GC-GGCUGCag -5'
24841 3' -63.3 NC_005284.1 + 8733 0.66 0.348866
Target:  5'- aGAGGCCGGag-CGCuuGCCGuCGa- -3'
miRNA:   3'- aCUCCGGCCgcaGCGcgCGGCuGCag -5'
24841 3' -63.3 NC_005284.1 + 47782 0.66 0.341029
Target:  5'- cGAGG-CGGCGcUCGCGgaGgCGACGg- -3'
miRNA:   3'- aCUCCgGCCGC-AGCGCg-CgGCUGCag -5'
24841 3' -63.3 NC_005284.1 + 48860 0.66 0.341029
Target:  5'- cGAGGCgaaagCGGCGgagaagUCG-GCGCCGugGa- -3'
miRNA:   3'- aCUCCG-----GCCGC------AGCgCGCGGCugCag -5'
24841 3' -63.3 NC_005284.1 + 33483 0.66 0.333319
Target:  5'- --cGGCCGGCGcUGC-UGCCGACa-- -3'
miRNA:   3'- acuCCGGCCGCaGCGcGCGGCUGcag -5'
24841 3' -63.3 NC_005284.1 + 11859 0.66 0.333319
Target:  5'- uUGcAGGCCGaC-UgGCGCGUCGGCGUg -3'
miRNA:   3'- -AC-UCCGGCcGcAgCGCGCGGCUGCAg -5'
24841 3' -63.3 NC_005284.1 + 258 0.66 0.333319
Target:  5'- aGAGGCCGcUGUCGCGgCGCaaGAUG-Cg -3'
miRNA:   3'- aCUCCGGCcGCAGCGC-GCGg-CUGCaG- -5'
24841 3' -63.3 NC_005284.1 + 20005 0.66 0.325738
Target:  5'- cGAGGUCGGCGaaGC-UGCUGAUGg- -3'
miRNA:   3'- aCUCCGGCCGCagCGcGCGGCUGCag -5'
24841 3' -63.3 NC_005284.1 + 13193 0.66 0.318285
Target:  5'- --cGGCgCGGCcUCGCGCGCguACGUUg -3'
miRNA:   3'- acuCCG-GCCGcAGCGCGCGgcUGCAG- -5'
24841 3' -63.3 NC_005284.1 + 44104 0.66 0.310962
Target:  5'- cGAGGCCcgccGUGUCGauCGCGCCcGCGg- -3'
miRNA:   3'- aCUCCGGc---CGCAGC--GCGCGGcUGCag -5'
24841 3' -63.3 NC_005284.1 + 34217 0.66 0.310962
Target:  5'- -cAGGCCGGCuuucgauucGUucUGCGcCGUCGAUGUCc -3'
miRNA:   3'- acUCCGGCCG---------CA--GCGC-GCGGCUGCAG- -5'
24841 3' -63.3 NC_005284.1 + 32018 0.66 0.310962
Target:  5'- uUGAGGCUGaCGaUCGCGCGCCccuUGaUCg -3'
miRNA:   3'- -ACUCCGGCcGC-AGCGCGCGGcu-GC-AG- -5'
24841 3' -63.3 NC_005284.1 + 40169 0.66 0.30879
Target:  5'- cGAGGUagcgcgcgagcguuCGGCGcCGgaacacuuuCGCGCCGACGa- -3'
miRNA:   3'- aCUCCG--------------GCCGCaGC---------GCGCGGCUGCag -5'
24841 3' -63.3 NC_005284.1 + 38572 0.67 0.303768
Target:  5'- cGAGGCCGGCcuGUUGCGgacugagcaucUGCaCGAUGcCg -3'
miRNA:   3'- aCUCCGGCCG--CAGCGC-----------GCG-GCUGCaG- -5'
24841 3' -63.3 NC_005284.1 + 12051 0.67 0.303768
Target:  5'- cGcGGUuuuCGGCG-CGUGCGgCGAUGUCu -3'
miRNA:   3'- aCuCCG---GCCGCaGCGCGCgGCUGCAG- -5'
24841 3' -63.3 NC_005284.1 + 45423 0.67 0.303055
Target:  5'- cGcGGCCGGCGacgauauUCGCGgCGUCGcgauUGUCg -3'
miRNA:   3'- aCuCCGGCCGC-------AGCGC-GCGGCu---GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.