miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24842 3' -57.7 NC_005284.1 + 42334 0.72 0.296671
Target:  5'- cGCGgGguucgACGAUCCGCCcUCGAUCGAa -3'
miRNA:   3'- -CGCgUa----UGCUGGGCGGcAGCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 8248 0.71 0.318866
Target:  5'- cGCGC-UGCGGCUCGgcaagaCGUUGGCCGAg -3'
miRNA:   3'- -CGCGuAUGCUGGGCg-----GCAGCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 53654 0.71 0.318866
Target:  5'- -aGCAcgaugGCGACgCGCCGUCGcCCGGg -3'
miRNA:   3'- cgCGUa----UGCUGgGCGGCAGCuGGCUg -5'
24842 3' -57.7 NC_005284.1 + 36162 0.71 0.326536
Target:  5'- uGCGCGU-CGACCUGuuGUCGGauGAUc -3'
miRNA:   3'- -CGCGUAuGCUGGGCggCAGCUggCUG- -5'
24842 3' -57.7 NC_005284.1 + 6783 0.71 0.334343
Target:  5'- cGUuCAUGCGGCCgGCguuugaugCGUCGAUCGGCg -3'
miRNA:   3'- -CGcGUAUGCUGGgCG--------GCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 15954 0.7 0.366921
Target:  5'- cGCGCGacgcCGGCCCacguucGCCGUguucaaCGGCCGGCg -3'
miRNA:   3'- -CGCGUau--GCUGGG------CGGCA------GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 44149 0.7 0.366921
Target:  5'- cGCGCA-GCGcuuCgCCGCCGcUCGucGCCGACa -3'
miRNA:   3'- -CGCGUaUGCu--G-GGCGGC-AGC--UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 11694 0.7 0.366921
Target:  5'- cGCGUgaGCGACgaguuUCGCCGUCGACgGgACg -3'
miRNA:   3'- -CGCGuaUGCUG-----GGCGGCAGCUGgC-UG- -5'
24842 3' -57.7 NC_005284.1 + 8539 0.7 0.370297
Target:  5'- cGCGCGUagauGCGuccauuccgcaucccACCCGCgGUCGGCCa-- -3'
miRNA:   3'- -CGCGUA----UGC---------------UGGGCGgCAGCUGGcug -5'
24842 3' -57.7 NC_005284.1 + 19379 0.7 0.3754
Target:  5'- uGCGaa-GCGAUUCGCCGU-GAUCGACg -3'
miRNA:   3'- -CGCguaUGCUGGGCGGCAgCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 45436 0.7 0.3754
Target:  5'- cGCGCucGCG-CCCGUCGcUUGAuCCGACu -3'
miRNA:   3'- -CGCGuaUGCuGGGCGGC-AGCU-GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 47135 0.7 0.39275
Target:  5'- aCGCucgucACGgacccgaagcACCCGCUGUaCGACCGGCg -3'
miRNA:   3'- cGCGua---UGC----------UGGGCGGCA-GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 36204 0.7 0.399834
Target:  5'- cCGUAcACGauGCCCGCCGcagucagcgacaCGACCGACg -3'
miRNA:   3'- cGCGUaUGC--UGGGCGGCa-----------GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 46440 0.7 0.401618
Target:  5'- cCGCAUGCaGAUCCGCaCGaUCGucugcaACCGGCg -3'
miRNA:   3'- cGCGUAUG-CUGGGCG-GC-AGC------UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 53481 0.69 0.419731
Target:  5'- uUGCAUGCGAgaagcCCCGCCGguUCG-CCGcGCg -3'
miRNA:   3'- cGCGUAUGCU-----GGGCGGC--AGCuGGC-UG- -5'
24842 3' -57.7 NC_005284.1 + 38219 0.69 0.419731
Target:  5'- cCGCGUucuggauCGGCgUGCCGUCGAgauagaCCGACu -3'
miRNA:   3'- cGCGUAu------GCUGgGCGGCAGCU------GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 336 0.69 0.419731
Target:  5'- uCGCA-ACGGCCCuGUCGUCGACagcucgcaaGGCa -3'
miRNA:   3'- cGCGUaUGCUGGG-CGGCAGCUGg--------CUG- -5'
24842 3' -57.7 NC_005284.1 + 54696 0.69 0.426187
Target:  5'- aGCGguUGCGgugacgugguggugGCCCGuCCGUCGuugcccgcCCGGCg -3'
miRNA:   3'- -CGCguAUGC--------------UGGGC-GGCAGCu-------GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 47265 0.69 0.438331
Target:  5'- uCGuCGUuCGACUgguaauUGCCGUCGACCGAg -3'
miRNA:   3'- cGC-GUAuGCUGG------GCGGCAGCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 24531 0.69 0.438331
Target:  5'- aGCGaacgaACGcGCCCGCuCGaCGGCCGACu -3'
miRNA:   3'- -CGCgua--UGC-UGGGCG-GCaGCUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.