miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24842 3' -57.7 NC_005284.1 + 37933 1.11 0.000466
Target:  5'- uGCGCAUACGACCCGCCGUCGACCGACa -3'
miRNA:   3'- -CGCGUAUGCUGGGCGGCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 36771 0.84 0.046258
Target:  5'- -aGCGUGacCGugUCGCCGUCGACCGACu -3'
miRNA:   3'- cgCGUAU--GCugGGCGGCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 33946 0.8 0.088279
Target:  5'- uGCGgAaGCGccGCCCGCuCGUCGGCCGGCg -3'
miRNA:   3'- -CGCgUaUGC--UGGGCG-GCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 33446 0.79 0.105345
Target:  5'- uGCGCGguaguCGAUCCgcagugcuuacacgcGCCGUCGGCCGGCg -3'
miRNA:   3'- -CGCGUau---GCUGGG---------------CGGCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 16692 0.77 0.144401
Target:  5'- gGCGUcgGCGugCCGCUGaCGuCCGACg -3'
miRNA:   3'- -CGCGuaUGCugGGCGGCaGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 21676 0.77 0.144401
Target:  5'- cGCGUcgGCGGuggCCGCCGUCGACCaACg -3'
miRNA:   3'- -CGCGuaUGCUg--GGCGGCAGCUGGcUG- -5'
24842 3' -57.7 NC_005284.1 + 25565 0.77 0.144401
Target:  5'- cGUGCAUuCGAuCCCGCCGUCcGCgCGGCg -3'
miRNA:   3'- -CGCGUAuGCU-GGGCGGCAGcUG-GCUG- -5'
24842 3' -57.7 NC_005284.1 + 6785 0.77 0.14714
Target:  5'- cGCGCGUcACG-CCCGCgaauuccgcaauggCGUCGAUCGACg -3'
miRNA:   3'- -CGCGUA-UGCuGGGCG--------------GCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 37710 0.76 0.156473
Target:  5'- cGCGCAUACGGgccgcCCCGCCGaaaGGCCGcGCu -3'
miRNA:   3'- -CGCGUAUGCU-----GGGCGGCag-CUGGC-UG- -5'
24842 3' -57.7 NC_005284.1 + 33218 0.76 0.165021
Target:  5'- uGCGCGUcgaacgcccgcGCGGCCUGCuCGUCGgcaaGCCGAUg -3'
miRNA:   3'- -CGCGUA-----------UGCUGGGCG-GCAGC----UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 36904 0.76 0.173987
Target:  5'- cGCGgAUGCG-CCCGCCGaUCcggGGCCGGCc -3'
miRNA:   3'- -CGCgUAUGCuGGGCGGC-AG---CUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 42370 0.74 0.219873
Target:  5'- cGCGCugacCGAgauCCCGCCGUUGcgcGCCGGCg -3'
miRNA:   3'- -CGCGuau-GCU---GGGCGGCAGC---UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 6400 0.74 0.231381
Target:  5'- aCGCucggauagauGUGCGugCCGUCGUCGugCGAa -3'
miRNA:   3'- cGCG----------UAUGCugGGCGGCAGCugGCUg -5'
24842 3' -57.7 NC_005284.1 + 46160 0.74 0.231381
Target:  5'- cGCGCAccgcauugaaaUACGAgCCgGCCGUCGACgagaGACc -3'
miRNA:   3'- -CGCGU-----------AUGCU-GGgCGGCAGCUGg---CUG- -5'
24842 3' -57.7 NC_005284.1 + 39513 0.74 0.231381
Target:  5'- aGUGCAUGUGguGCUCGCCG-CGGCCGAUg -3'
miRNA:   3'- -CGCGUAUGC--UGGGCGGCaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 24104 0.74 0.237324
Target:  5'- aGCGCGU-CGGCaagaaaGCCGcCGGCCGGCu -3'
miRNA:   3'- -CGCGUAuGCUGgg----CGGCaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 33351 0.73 0.25592
Target:  5'- aCGCcucgaACGACaCCGCCcguucGUCGGCCGGCg -3'
miRNA:   3'- cGCGua---UGCUG-GGCGG-----CAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 30658 0.73 0.25592
Target:  5'- uGUGCGUGCGG-CCGUCGagcagcCGGCCGGCg -3'
miRNA:   3'- -CGCGUAUGCUgGGCGGCa-----GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 30947 0.72 0.275016
Target:  5'- cCGCcgGCGAUcacccaauguaggCCGCCGUCGGCUGGu -3'
miRNA:   3'- cGCGuaUGCUG-------------GGCGGCAGCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 8600 0.72 0.289544
Target:  5'- cCGCAUGCGcggucuCUCGUCGaCGGCCGGCu -3'
miRNA:   3'- cGCGUAUGCu-----GGGCGGCaGCUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.