miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24842 3' -57.7 NC_005284.1 + 336 0.69 0.419731
Target:  5'- uCGCA-ACGGCCCuGUCGUCGACagcucgcaaGGCa -3'
miRNA:   3'- cGCGUaUGCUGGG-CGGCAGCUGg--------CUG- -5'
24842 3' -57.7 NC_005284.1 + 989 0.67 0.569027
Target:  5'- uGCGCAUgaccaagauGCG-CUCGCCGcagCaGCCGGCa -3'
miRNA:   3'- -CGCGUA---------UGCuGGGCGGCa--GcUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 2893 0.67 0.579595
Target:  5'- -gGguUGCGACCaucaggugUGCUcUCGACCGACc -3'
miRNA:   3'- cgCguAUGCUGG--------GCGGcAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 3701 0.67 0.527314
Target:  5'- cCGCAUuuCGAUuuggCCGUCGUCGAgcUCGACa -3'
miRNA:   3'- cGCGUAu-GCUG----GGCGGCAGCU--GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 5425 0.67 0.579595
Target:  5'- cGCGCucgGCGAa--GCUG-CGACCGAUa -3'
miRNA:   3'- -CGCGua-UGCUgggCGGCaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 5889 0.67 0.55746
Target:  5'- gGCGCA-GCGACaccuucgCCGCCGggCGuguccacggcGCCGACu -3'
miRNA:   3'- -CGCGUaUGCUG-------GGCGGCa-GC----------UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 6275 0.67 0.558509
Target:  5'- cGCGCGUAUucccacGCCCGCCcuUCGACUcGCu -3'
miRNA:   3'- -CGCGUAUGc-----UGGGCGGc-AGCUGGcUG- -5'
24842 3' -57.7 NC_005284.1 + 6329 0.67 0.548046
Target:  5'- uGCGCAUuCGAuUUCGCCG-CGAugUCGACa -3'
miRNA:   3'- -CGCGUAuGCU-GGGCGGCaGCU--GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 6400 0.74 0.231381
Target:  5'- aCGCucggauagauGUGCGugCCGUCGUCGugCGAa -3'
miRNA:   3'- cGCG----------UAUGCugGGCGGCAGCugGCUg -5'
24842 3' -57.7 NC_005284.1 + 6783 0.71 0.334343
Target:  5'- cGUuCAUGCGGCCgGCguuugaugCGUCGAUCGGCg -3'
miRNA:   3'- -CGcGUAUGCUGGgCG--------GCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 6785 0.77 0.14714
Target:  5'- cGCGCGUcACG-CCCGCgaauuccgcaauggCGUCGAUCGACg -3'
miRNA:   3'- -CGCGUA-UGCuGGGCG--------------GCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 6998 0.67 0.527314
Target:  5'- cGCGCucgacaugGCG-CUCGCCGggcUGACUGGCg -3'
miRNA:   3'- -CGCGua------UGCuGGGCGGCa--GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 7064 0.67 0.527314
Target:  5'- cGCGCcgACGuucACCgaCGCCGaUCGgcuuGCCGACu -3'
miRNA:   3'- -CGCGuaUGC---UGG--GCGGC-AGC----UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 7325 0.66 0.600845
Target:  5'- -aGCAUGCGAgCCaucuucucgGCCcgGUUGAUCGGCg -3'
miRNA:   3'- cgCGUAUGCUgGG---------CGG--CAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 7499 0.67 0.536609
Target:  5'- cGCGCGUugaucacGCGGCgaCgGCCGUCGAUC-ACg -3'
miRNA:   3'- -CGCGUA-------UGCUG--GgCGGCAGCUGGcUG- -5'
24842 3' -57.7 NC_005284.1 + 7548 0.68 0.486792
Target:  5'- aGgGCAaaacauucUGCGugCCGCgCGUgCGACgGGCg -3'
miRNA:   3'- -CgCGU--------AUGCugGGCG-GCA-GCUGgCUG- -5'
24842 3' -57.7 NC_005284.1 + 7716 0.67 0.558509
Target:  5'- uGCGCcgaagcuCGugCCGCCGcCGG-CGGCg -3'
miRNA:   3'- -CGCGuau----GCugGGCGGCaGCUgGCUG- -5'
24842 3' -57.7 NC_005284.1 + 7896 0.66 0.621126
Target:  5'- -aGCAUGCGAa-CGCCGgguucaaUCG-CCGGCg -3'
miRNA:   3'- cgCGUAUGCUggGCGGC-------AGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 8248 0.71 0.318866
Target:  5'- cGCGC-UGCGGCUCGgcaagaCGUUGGCCGAg -3'
miRNA:   3'- -CGCGuAUGCUGGGCg-----GCAGCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 8539 0.7 0.370297
Target:  5'- cGCGCGUagauGCGuccauuccgcaucccACCCGCgGUCGGCCa-- -3'
miRNA:   3'- -CGCGUA----UGC---------------UGGGCGgCAGCUGGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.