miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24842 3' -57.7 NC_005284.1 + 54696 0.69 0.426187
Target:  5'- aGCGguUGCGgugacgugguggugGCCCGuCCGUCGuugcccgcCCGGCg -3'
miRNA:   3'- -CGCguAUGC--------------UGGGC-GGCAGCu-------GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 36162 0.71 0.326536
Target:  5'- uGCGCGU-CGACCUGuuGUCGGauGAUc -3'
miRNA:   3'- -CGCGUAuGCUGGGCggCAGCUggCUG- -5'
24842 3' -57.7 NC_005284.1 + 6783 0.71 0.334343
Target:  5'- cGUuCAUGCGGCCgGCguuugaugCGUCGAUCGGCg -3'
miRNA:   3'- -CGcGUAUGCUGGgCG--------GCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 11694 0.7 0.366921
Target:  5'- cGCGUgaGCGACgaguuUCGCCGUCGACgGgACg -3'
miRNA:   3'- -CGCGuaUGCUG-----GGCGGCAGCUGgC-UG- -5'
24842 3' -57.7 NC_005284.1 + 15954 0.7 0.366921
Target:  5'- cGCGCGacgcCGGCCCacguucGCCGUguucaaCGGCCGGCg -3'
miRNA:   3'- -CGCGUau--GCUGGG------CGGCA------GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 19379 0.7 0.3754
Target:  5'- uGCGaa-GCGAUUCGCCGU-GAUCGACg -3'
miRNA:   3'- -CGCguaUGCUGGGCGGCAgCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 47135 0.7 0.39275
Target:  5'- aCGCucgucACGgacccgaagcACCCGCUGUaCGACCGGCg -3'
miRNA:   3'- cGCGua---UGC----------UGGGCGGCA-GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 336 0.69 0.419731
Target:  5'- uCGCA-ACGGCCCuGUCGUCGACagcucgcaaGGCa -3'
miRNA:   3'- cGCGUaUGCUGGG-CGGCAGCUGg--------CUG- -5'
24842 3' -57.7 NC_005284.1 + 53481 0.69 0.419731
Target:  5'- uUGCAUGCGAgaagcCCCGCCGguUCG-CCGcGCg -3'
miRNA:   3'- cGCGUAUGCU-----GGGCGGC--AGCuGGC-UG- -5'
24842 3' -57.7 NC_005284.1 + 8248 0.71 0.318866
Target:  5'- cGCGC-UGCGGCUCGgcaagaCGUUGGCCGAg -3'
miRNA:   3'- -CGCGuAUGCUGGGCg-----GCAGCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 8600 0.72 0.289544
Target:  5'- cCGCAUGCGcggucuCUCGUCGaCGGCCGGCu -3'
miRNA:   3'- cGCGUAUGCu-----GGGCGGCaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 30947 0.72 0.275016
Target:  5'- cCGCcgGCGAUcacccaauguaggCCGCCGUCGGCUGGu -3'
miRNA:   3'- cGCGuaUGCUG-------------GGCGGCAGCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 33446 0.79 0.105345
Target:  5'- uGCGCGguaguCGAUCCgcagugcuuacacgcGCCGUCGGCCGGCg -3'
miRNA:   3'- -CGCGUau---GCUGGG---------------CGGCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 16692 0.77 0.144401
Target:  5'- gGCGUcgGCGugCCGCUGaCGuCCGACg -3'
miRNA:   3'- -CGCGuaUGCugGGCGGCaGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 21676 0.77 0.144401
Target:  5'- cGCGUcgGCGGuggCCGCCGUCGACCaACg -3'
miRNA:   3'- -CGCGuaUGCUg--GGCGGCAGCUGGcUG- -5'
24842 3' -57.7 NC_005284.1 + 25565 0.77 0.144401
Target:  5'- cGUGCAUuCGAuCCCGCCGUCcGCgCGGCg -3'
miRNA:   3'- -CGCGUAuGCU-GGGCGGCAGcUG-GCUG- -5'
24842 3' -57.7 NC_005284.1 + 37710 0.76 0.156473
Target:  5'- cGCGCAUACGGgccgcCCCGCCGaaaGGCCGcGCu -3'
miRNA:   3'- -CGCGUAUGCU-----GGGCGGCag-CUGGC-UG- -5'
24842 3' -57.7 NC_005284.1 + 39513 0.74 0.231381
Target:  5'- aGUGCAUGUGguGCUCGCCG-CGGCCGAUg -3'
miRNA:   3'- -CGCGUAUGC--UGGGCGGCaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 30658 0.73 0.25592
Target:  5'- uGUGCGUGCGG-CCGUCGagcagcCGGCCGGCg -3'
miRNA:   3'- -CGCGUAUGCUgGGCGGCa-----GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 33351 0.73 0.25592
Target:  5'- aCGCcucgaACGACaCCGCCcguucGUCGGCCGGCg -3'
miRNA:   3'- cGCGua---UGCUG-GGCGG-----CAGCUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.