miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24842 3' -57.7 NC_005284.1 + 8600 0.72 0.289544
Target:  5'- cCGCAUGCGcggucuCUCGUCGaCGGCCGGCu -3'
miRNA:   3'- cGCGUAUGCu-----GGGCGGCaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 8887 0.66 0.622195
Target:  5'- uGCGCAUcgcgcGCGACacaCGgcaaCCGcUCGACgCGACa -3'
miRNA:   3'- -CGCGUA-----UGCUGg--GC----GGC-AGCUG-GCUG- -5'
24842 3' -57.7 NC_005284.1 + 8978 0.66 0.643578
Target:  5'- aGUGCGUGCGgacACCuuCGCCGagcauGCCGACg -3'
miRNA:   3'- -CGCGUAUGC---UGG--GCGGCagc--UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 9230 0.66 0.590203
Target:  5'- uGCGCGgGCGACgCGCCacgCGG-CGGCa -3'
miRNA:   3'- -CGCGUaUGCUGgGCGGca-GCUgGCUG- -5'
24842 3' -57.7 NC_005284.1 + 9575 0.67 0.569027
Target:  5'- cGCGCu--CGAUCUcguGCCGuUCGACaCGGCc -3'
miRNA:   3'- -CGCGuauGCUGGG---CGGC-AGCUG-GCUG- -5'
24842 3' -57.7 NC_005284.1 + 9586 0.66 0.632887
Target:  5'- aGCGCAggGCGAUCgCGCUGcCGcGgCGGCg -3'
miRNA:   3'- -CGCGUa-UGCUGG-GCGGCaGC-UgGCUG- -5'
24842 3' -57.7 NC_005284.1 + 10081 0.66 0.639302
Target:  5'- cGCGCGgcgaccGCGACCgCGgCGggucugaagacggCGACCGAa -3'
miRNA:   3'- -CGCGUa-----UGCUGG-GCgGCa------------GCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 10486 0.68 0.517056
Target:  5'- aCGUuugGCGAUgCGCCGUCGguggucucggauGCCGAUc -3'
miRNA:   3'- cGCGua-UGCUGgGCGGCAGC------------UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 10876 0.68 0.467089
Target:  5'- -gGUAUgACGGCCCGCCagaaGGCCGAg -3'
miRNA:   3'- cgCGUA-UGCUGGGCGGcag-CUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 10932 0.66 0.600845
Target:  5'- uGCGCA---GGCCCGCa--UGGCCGGCc -3'
miRNA:   3'- -CGCGUaugCUGGGCGgcaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 11694 0.7 0.366921
Target:  5'- cGCGUgaGCGACgaguuUCGCCGUCGACgGgACg -3'
miRNA:   3'- -CGCGuaUGCUG-----GGCGGCAGCUGgC-UG- -5'
24842 3' -57.7 NC_005284.1 + 14182 0.67 0.527314
Target:  5'- gGCGagaGCGGCCCcccaaaggggcgGCCGUCG-CUGACc -3'
miRNA:   3'- -CGCguaUGCUGGG------------CGGCAGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 14582 0.66 0.631817
Target:  5'- uGCGCuugGCGAUCuCGUCGgcgCGAaaguguuCCGGCg -3'
miRNA:   3'- -CGCGua-UGCUGG-GCGGCa--GCU-------GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 14978 0.67 0.527314
Target:  5'- uGCgGCAcGCGGCCCGguugaagcUCGaauaCGACCGACg -3'
miRNA:   3'- -CG-CGUaUGCUGGGC--------GGCa---GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 15109 0.68 0.506881
Target:  5'- cGCGCGagugcUGCgGGCUCGUCGUgaaGACCGAg -3'
miRNA:   3'- -CGCGU-----AUG-CUGGGCGGCAg--CUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 15160 0.66 0.590203
Target:  5'- uGCGCugccGCaACCUugcgGCCGUgcCGACCGACc -3'
miRNA:   3'- -CGCGua--UGcUGGG----CGGCA--GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 15954 0.7 0.366921
Target:  5'- cGCGCGacgcCGGCCCacguucGCCGUguucaaCGGCCGGCg -3'
miRNA:   3'- -CGCGUau--GCUGGG------CGGCA------GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 16296 0.66 0.622195
Target:  5'- uGCGCAggGCGAgCCgguGCCGcUCGucAUCGGCg -3'
miRNA:   3'- -CGCGUa-UGCUgGG---CGGC-AGC--UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 16692 0.77 0.144401
Target:  5'- gGCGUcgGCGugCCGCUGaCGuCCGACg -3'
miRNA:   3'- -CGCGuaUGCugGGCGGCaGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 17162 0.67 0.527314
Target:  5'- cGUGCuguuucuCGugCUGCUGUCGAUCGuCa -3'
miRNA:   3'- -CGCGuau----GCugGGCGGCAGCUGGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.