miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24843 3' -57 NC_005284.1 + 15813 0.66 0.624324
Target:  5'- aGCGcGCaGCcCGCGGAUCAGCaucGCgCAc -3'
miRNA:   3'- aCGC-CG-CGuGCGCCUAGUUGgu-UG-GU- -5'
24843 3' -57 NC_005284.1 + 49643 0.66 0.624324
Target:  5'- aGCGGCGUucCGaCGGuUCGAUCGAgCGa -3'
miRNA:   3'- aCGCCGCGu-GC-GCCuAGUUGGUUgGU- -5'
24843 3' -57 NC_005284.1 + 21337 0.66 0.602469
Target:  5'- gGCGGgGCGCGUGucGcgCGAUCAACgAg -3'
miRNA:   3'- aCGCCgCGUGCGC--CuaGUUGGUUGgU- -5'
24843 3' -57 NC_005284.1 + 22259 0.66 0.602469
Target:  5'- gGCGGgGCgGCGCuGuacuUCAugCGACCGc -3'
miRNA:   3'- aCGCCgCG-UGCGcCu---AGUugGUUGGU- -5'
24843 3' -57 NC_005284.1 + 36537 0.66 0.591576
Target:  5'- gGCGGCuGCACcgaugGCGGAacgaUCGugAUCGGCCGu -3'
miRNA:   3'- aCGCCG-CGUG-----CGCCU----AGU--UGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 32962 0.66 0.580715
Target:  5'- gGCGGCGCuggaaGCGcCGGG-CAcGCCGucGCCAc -3'
miRNA:   3'- aCGCCGCG-----UGC-GCCUaGU-UGGU--UGGU- -5'
24843 3' -57 NC_005284.1 + 12150 0.66 0.580715
Target:  5'- gUGCGGCaaGCGCGGcuGUCGGCuCGaacGCCu -3'
miRNA:   3'- -ACGCCGcgUGCGCC--UAGUUG-GU---UGGu -5'
24843 3' -57 NC_005284.1 + 49388 0.67 0.569897
Target:  5'- aGCuGGCGCGCcgcaCGGG-CAAgCAGCCGa -3'
miRNA:   3'- aCG-CCGCGUGc---GCCUaGUUgGUUGGU- -5'
24843 3' -57 NC_005284.1 + 15898 0.67 0.569897
Target:  5'- gGCGGUGCGCGCGcuAUCGGugcugauucCCGGCUu -3'
miRNA:   3'- aCGCCGCGUGCGCc-UAGUU---------GGUUGGu -5'
24843 3' -57 NC_005284.1 + 46586 0.67 0.569897
Target:  5'- gGCGGCGCA-GUGGG-CAAC--GCCGa -3'
miRNA:   3'- aCGCCGCGUgCGCCUaGUUGguUGGU- -5'
24843 3' -57 NC_005284.1 + 3135 0.67 0.568818
Target:  5'- cGUcGCGCGCGCGuGAUucacauaCAGCCGAgCAa -3'
miRNA:   3'- aCGcCGCGUGCGC-CUA-------GUUGGUUgGU- -5'
24843 3' -57 NC_005284.1 + 6037 0.67 0.559129
Target:  5'- cGCGGCGCacgccGCGCGGGUUGAUgGuUCu -3'
miRNA:   3'- aCGCCGCG-----UGCGCCUAGUUGgUuGGu -5'
24843 3' -57 NC_005284.1 + 50331 0.67 0.559129
Target:  5'- gGCGGCGUGcCGCGGcg-AACCGugCu -3'
miRNA:   3'- aCGCCGCGU-GCGCCuagUUGGUugGu -5'
24843 3' -57 NC_005284.1 + 23121 0.67 0.548419
Target:  5'- cGCuGGCGCA-GCGGcaAUgAGCCGcuGCCAg -3'
miRNA:   3'- aCG-CCGCGUgCGCC--UAgUUGGU--UGGU- -5'
24843 3' -57 NC_005284.1 + 26308 0.67 0.542024
Target:  5'- cUGCGGCGCGugcgaGCGGAaagcauggacauucuUCAGCgCGGCaCGg -3'
miRNA:   3'- -ACGCCGCGUg----CGCCU---------------AGUUG-GUUG-GU- -5'
24843 3' -57 NC_005284.1 + 43623 0.67 0.537774
Target:  5'- cGCGGCgGC-CGCGGcgcgagcugcGUCAGCauugaAGCCGa -3'
miRNA:   3'- aCGCCG-CGuGCGCC----------UAGUUGg----UUGGU- -5'
24843 3' -57 NC_005284.1 + 3742 0.67 0.531421
Target:  5'- cUGUGGCaGCACGaCuccuauacgccgaucGGAUCAuggGCCGGCCu -3'
miRNA:   3'- -ACGCCG-CGUGC-G---------------CCUAGU---UGGUUGGu -5'
24843 3' -57 NC_005284.1 + 50276 0.67 0.527201
Target:  5'- --aGGCGaucgugaaGCGGAUCAagcgGCCGACCGu -3'
miRNA:   3'- acgCCGCgug-----CGCCUAGU----UGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 51749 0.67 0.527201
Target:  5'- cGCGGCGCGCcuGCGGGaaguggaggcgUUAGCgguaGGCCGg -3'
miRNA:   3'- aCGCCGCGUG--CGCCU-----------AGUUGg---UUGGU- -5'
24843 3' -57 NC_005284.1 + 11177 0.67 0.527201
Target:  5'- cGCGGCcgccGCGCGCGGAa-AGCaAGCCu -3'
miRNA:   3'- aCGCCG----CGUGCGCCUagUUGgUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.