miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24843 3' -57 NC_005284.1 + 3135 0.67 0.568818
Target:  5'- cGUcGCGCGCGCGuGAUucacauaCAGCCGAgCAa -3'
miRNA:   3'- aCGcCGCGUGCGC-CUA-------GUUGGUUgGU- -5'
24843 3' -57 NC_005284.1 + 3742 0.67 0.531421
Target:  5'- cUGUGGCaGCACGaCuccuauacgccgaucGGAUCAuggGCCGGCCu -3'
miRNA:   3'- -ACGCCG-CGUGC-G---------------CCUAGU---UGGUUGGu -5'
24843 3' -57 NC_005284.1 + 5458 0.68 0.455714
Target:  5'- cGUcGCGCACGCGuGccguGCCAACCAu -3'
miRNA:   3'- aCGcCGCGUGCGC-CuaguUGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 6037 0.67 0.559129
Target:  5'- cGCGGCGCacgccGCGCGGGUUGAUgGuUCu -3'
miRNA:   3'- aCGCCGCG-----UGCGCCUAGUUGgUuGGu -5'
24843 3' -57 NC_005284.1 + 6364 0.68 0.455714
Target:  5'- cGCGGCGaUugGCGcGUCuuCgCAGCCAa -3'
miRNA:   3'- aCGCCGC-GugCGCcUAGuuG-GUUGGU- -5'
24843 3' -57 NC_005284.1 + 6845 0.68 0.465619
Target:  5'- -uUGGCGCGCGCG-AUCGAUCGugUg -3'
miRNA:   3'- acGCCGCGUGCGCcUAGUUGGUugGu -5'
24843 3' -57 NC_005284.1 + 8655 0.68 0.475634
Target:  5'- gGCgGGCGCACaGCGGAUgCGGCguuuGCCu -3'
miRNA:   3'- aCG-CCGCGUG-CGCCUA-GUUGgu--UGGu -5'
24843 3' -57 NC_005284.1 + 9499 0.72 0.277981
Target:  5'- gGCGGCGacaGCGUGGGUCGGcgcCCGGCgAg -3'
miRNA:   3'- aCGCCGCg--UGCGCCUAGUU---GGUUGgU- -5'
24843 3' -57 NC_005284.1 + 11177 0.67 0.527201
Target:  5'- cGCGGCcgccGCGCGCGGAa-AGCaAGCCu -3'
miRNA:   3'- aCGCCG----CGUGCGCCUagUUGgUUGGu -5'
24843 3' -57 NC_005284.1 + 12150 0.66 0.580715
Target:  5'- gUGCGGCaaGCGCGGcuGUCGGCuCGaacGCCu -3'
miRNA:   3'- -ACGCCGcgUGCGCC--UAGUUG-GU---UGGu -5'
24843 3' -57 NC_005284.1 + 14273 0.69 0.417279
Target:  5'- aUGCGGCGUuacaggACGCGG-UCAAgCGgauuGCCGa -3'
miRNA:   3'- -ACGCCGCG------UGCGCCuAGUUgGU----UGGU- -5'
24843 3' -57 NC_005284.1 + 15271 0.69 0.445924
Target:  5'- -cCGGCGCAU-CGGcaCAGCCGACCGa -3'
miRNA:   3'- acGCCGCGUGcGCCuaGUUGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 15813 0.66 0.624324
Target:  5'- aGCGcGCaGCcCGCGGAUCAGCaucGCgCAc -3'
miRNA:   3'- aCGC-CG-CGuGCGCCUAGUUGgu-UG-GU- -5'
24843 3' -57 NC_005284.1 + 15898 0.67 0.569897
Target:  5'- gGCGGUGCGCGCGcuAUCGGugcugauucCCGGCUu -3'
miRNA:   3'- aCGCCGCGUGCGCc-UAGUU---------GGUUGGu -5'
24843 3' -57 NC_005284.1 + 16756 0.69 0.445924
Target:  5'- cUGCGGUGCGCGUGcgcuucGGUguGCCGGCg- -3'
miRNA:   3'- -ACGCCGCGUGCGC------CUAguUGGUUGgu -5'
24843 3' -57 NC_005284.1 + 18929 0.74 0.209281
Target:  5'- aGCuGCGCGCGCcGAUCGACCuAAUCAc -3'
miRNA:   3'- aCGcCGCGUGCGcCUAGUUGG-UUGGU- -5'
24843 3' -57 NC_005284.1 + 19407 0.74 0.203821
Target:  5'- gGCGGUGCAgGCGuGAUCGGCgcGCCGu -3'
miRNA:   3'- aCGCCGCGUgCGC-CUAGUUGguUGGU- -5'
24843 3' -57 NC_005284.1 + 21328 0.72 0.2996
Target:  5'- cGaCGGCGCGuguaagcacUGCGGAUCGACUA-CCGc -3'
miRNA:   3'- aC-GCCGCGU---------GCGCCUAGUUGGUuGGU- -5'
24843 3' -57 NC_005284.1 + 21337 0.66 0.602469
Target:  5'- gGCGGgGCGCGUGucGcgCGAUCAACgAg -3'
miRNA:   3'- aCGCCgCGUGCGC--CuaGUUGGUUGgU- -5'
24843 3' -57 NC_005284.1 + 22259 0.66 0.602469
Target:  5'- gGCGGgGCgGCGCuGuacuUCAugCGACCGc -3'
miRNA:   3'- aCGCCgCG-UGCGcCu---AGUugGUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.