miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24843 3' -57 NC_005284.1 + 53403 0.68 0.455714
Target:  5'- cGCcaGCaCGCGCGGAUCGGuCCAAUCGu -3'
miRNA:   3'- aCGc-CGcGUGCGCCUAGUU-GGUUGGU- -5'
24843 3' -57 NC_005284.1 + 53333 0.71 0.338475
Target:  5'- aGCGGaCGCACuGCGGcuGUCGcuucGCCAGCgCAg -3'
miRNA:   3'- aCGCC-GCGUG-CGCC--UAGU----UGGUUG-GU- -5'
24843 3' -57 NC_005284.1 + 51749 0.67 0.527201
Target:  5'- cGCGGCGCGCcuGCGGGaaguggaggcgUUAGCgguaGGCCGg -3'
miRNA:   3'- aCGCCGCGUG--CGCCU-----------AGUUGg---UUGGU- -5'
24843 3' -57 NC_005284.1 + 50484 0.7 0.372125
Target:  5'- uUGCGucGCGUgucacGCGUGGAUCGAUCAgaACCGg -3'
miRNA:   3'- -ACGC--CGCG-----UGCGCCUAGUUGGU--UGGU- -5'
24843 3' -57 NC_005284.1 + 50331 0.67 0.559129
Target:  5'- gGCGGCGUGcCGCGGcg-AACCGugCu -3'
miRNA:   3'- aCGCCGCGU-GCGCCuagUUGGUugGu -5'
24843 3' -57 NC_005284.1 + 50276 0.67 0.527201
Target:  5'- --aGGCGaucgugaaGCGGAUCAagcgGCCGACCGu -3'
miRNA:   3'- acgCCGCgug-----CGCCUAGU----UGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 50116 0.7 0.355019
Target:  5'- cGCGGCgaucgcGCACGCGGcGUUcGCCAuggACCGg -3'
miRNA:   3'- aCGCCG------CGUGCGCC-UAGuUGGU---UGGU- -5'
24843 3' -57 NC_005284.1 + 49643 0.66 0.624324
Target:  5'- aGCGGCGUucCGaCGGuUCGAUCGAgCGa -3'
miRNA:   3'- aCGCCGCGu-GC-GCCuAGUUGGUUgGU- -5'
24843 3' -57 NC_005284.1 + 49388 0.67 0.569897
Target:  5'- aGCuGGCGCGCcgcaCGGG-CAAgCAGCCGa -3'
miRNA:   3'- aCG-CCGCGUGc---GCCUaGUUgGUUGGU- -5'
24843 3' -57 NC_005284.1 + 48206 0.69 0.40706
Target:  5'- gGCGcGCGCuuACGCgccucgucacGGAUCAccuucgcACCAGCCAc -3'
miRNA:   3'- aCGC-CGCG--UGCG----------CCUAGU-------UGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 47785 0.75 0.183202
Target:  5'- gGCGGCGCuCGCGGAggCGACgGGCgAg -3'
miRNA:   3'- aCGCCGCGuGCGCCUa-GUUGgUUGgU- -5'
24843 3' -57 NC_005284.1 + 46586 0.67 0.569897
Target:  5'- gGCGGCGCA-GUGGG-CAAC--GCCGa -3'
miRNA:   3'- aCGCCGCGUgCGCCUaGUUGguUGGU- -5'
24843 3' -57 NC_005284.1 + 45442 0.7 0.380887
Target:  5'- cGCGGCGU-CGCGauuGUCGGgCGACCAg -3'
miRNA:   3'- aCGCCGCGuGCGCc--UAGUUgGUUGGU- -5'
24843 3' -57 NC_005284.1 + 43623 0.67 0.537774
Target:  5'- cGCGGCgGC-CGCGGcgcgagcugcGUCAGCauugaAGCCGa -3'
miRNA:   3'- aCGCCG-CGuGCGCC----------UAGUUGg----UUGGU- -5'
24843 3' -57 NC_005284.1 + 40482 0.74 0.198485
Target:  5'- gUGUGGCGaagACGCGGAUCAGCCu---- -3'
miRNA:   3'- -ACGCCGCg--UGCGCCUAGUUGGuuggu -5'
24843 3' -57 NC_005284.1 + 38755 0.72 0.277981
Target:  5'- -cCGGCGCaAUGCGGAUCucgucgcgcCCGACCGg -3'
miRNA:   3'- acGCCGCG-UGCGCCUAGuu-------GGUUGGU- -5'
24843 3' -57 NC_005284.1 + 37826 1.08 0.00069
Target:  5'- aUGCGGCGCACGCGGAUCAACCAACCAu -3'
miRNA:   3'- -ACGCCGCGUGCGCCUAGUUGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 36537 0.66 0.591576
Target:  5'- gGCGGCuGCACcgaugGCGGAacgaUCGugAUCGGCCGu -3'
miRNA:   3'- aCGCCG-CGUG-----CGCCU----AGU--UGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 34851 0.69 0.436253
Target:  5'- cGCacaGGCGCACGauugGGAUCGGCuCGACa- -3'
miRNA:   3'- aCG---CCGCGUGCg---CCUAGUUG-GUUGgu -5'
24843 3' -57 NC_005284.1 + 34254 0.68 0.495978
Target:  5'- cUGCGGCGUAacUGCGcGcgCAGCCAGuuUCAg -3'
miRNA:   3'- -ACGCCGCGU--GCGC-CuaGUUGGUU--GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.