miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24844 3' -63.9 NC_005284.1 + 36905 1.01 0.00075
Target:  5'- gCGGAUGCGCCCGCCGAUCCGG-GGCCg -3'
miRNA:   3'- -GCCUACGCGGGCGGCUAGGCCgCCGG- -5'
24844 3' -63.9 NC_005284.1 + 50520 0.77 0.057332
Target:  5'- cCGGGUGCGagucgCCGCCGcUCUuGCGGCCg -3'
miRNA:   3'- -GCCUACGCg----GGCGGCuAGGcCGCCGG- -5'
24844 3' -63.9 NC_005284.1 + 54603 0.77 0.057332
Target:  5'- ----cGCGCCuCGCCGAcaauccagUCCGGCGGCUc -3'
miRNA:   3'- gccuaCGCGG-GCGGCU--------AGGCCGCCGG- -5'
24844 3' -63.9 NC_005284.1 + 7010 0.76 0.062194
Target:  5'- ----gGCGCUCGCCGGgcugaCUGGCGGCCg -3'
miRNA:   3'- gccuaCGCGGGCGGCUa----GGCCGCCGG- -5'
24844 3' -63.9 NC_005284.1 + 18047 0.75 0.075134
Target:  5'- ----aGCGCUucgaCGCCGAUCCGGUGGCg -3'
miRNA:   3'- gccuaCGCGG----GCGGCUAGGCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 30735 0.74 0.08592
Target:  5'- aGGccGUGUCCGCCugccagauuGAUCCaGCGGCCg -3'
miRNA:   3'- gCCuaCGCGGGCGG---------CUAGGcCGCCGG- -5'
24844 3' -63.9 NC_005284.1 + 30646 0.73 0.103244
Target:  5'- cCGGGaauucguugugcgUGCGgCCGUCGAgcagccggCCGGCGGCUu -3'
miRNA:   3'- -GCCU-------------ACGCgGGCGGCUa-------GGCCGCCGG- -5'
24844 3' -63.9 NC_005284.1 + 43832 0.73 0.106293
Target:  5'- uGuAUGCGUCCGCUcGUCCGGCgacgaGGCCg -3'
miRNA:   3'- gCcUACGCGGGCGGcUAGGCCG-----CCGG- -5'
24844 3' -63.9 NC_005284.1 + 7711 0.73 0.109139
Target:  5'- aGcGGUGCGCCgaagcucgUGCCGccgCCGGCGGCg -3'
miRNA:   3'- gC-CUACGCGG--------GCGGCua-GGCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 44967 0.72 0.11811
Target:  5'- cCGuGAUGCGCgCGCCGAUuuccugacugCCGGCGacguuggcgcgcGCCg -3'
miRNA:   3'- -GC-CUACGCGgGCGGCUA----------GGCCGC------------CGG- -5'
24844 3' -63.9 NC_005284.1 + 46785 0.71 0.138143
Target:  5'- gGGAUgGUGCuuGCCGggCaGGCGGCg -3'
miRNA:   3'- gCCUA-CGCGggCGGCuaGgCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 33116 0.71 0.153186
Target:  5'- aCGGcgGC-CaCCGCCGAcgCGGCGGCa -3'
miRNA:   3'- -GCCuaCGcG-GGCGGCUagGCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 41319 0.7 0.1697
Target:  5'- uCGGAUGCGCauGCaagcUUCGGCGGCg -3'
miRNA:   3'- -GCCUACGCGggCGgcu-AGGCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 18784 0.7 0.173629
Target:  5'- uGGgcGCGCCUgGUCGAcacgUCCGGCaacgucgGGCCg -3'
miRNA:   3'- gCCuaCGCGGG-CGGCU----AGGCCG-------CCGG- -5'
24844 3' -63.9 NC_005284.1 + 20834 0.69 0.202449
Target:  5'- ----aGCGCCgGCCGAcgagCgGGCGGCg -3'
miRNA:   3'- gccuaCGCGGgCGGCUa---GgCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 32970 0.69 0.212767
Target:  5'- uGGAaGCGCCgggcaCGCCGucgccaCCGGCuGCCg -3'
miRNA:   3'- gCCUaCGCGG-----GCGGCua----GGCCGcCGG- -5'
24844 3' -63.9 NC_005284.1 + 47733 0.69 0.212767
Target:  5'- aGGccGUGCUCGgCGGUaCGGCGGCg -3'
miRNA:   3'- gCCuaCGCGGGCgGCUAgGCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 47505 0.69 0.217556
Target:  5'- aGGAUGCuaUCGCCGucguGUUCGGCGucgagguGCCg -3'
miRNA:   3'- gCCUACGcgGGCGGC----UAGGCCGC-------CGG- -5'
24844 3' -63.9 NC_005284.1 + 9734 0.69 0.218093
Target:  5'- aCGGAaGCgaaGCuuGCCGAagcgCgGGCGGUCg -3'
miRNA:   3'- -GCCUaCG---CGggCGGCUa---GgCCGCCGG- -5'
24844 3' -63.9 NC_005284.1 + 18925 0.69 0.222984
Target:  5'- aCGGAgcUGCGCgCGCCGAUcgaccuaaucaccCCGccaUGGCCg -3'
miRNA:   3'- -GCCU--ACGCGgGCGGCUA-------------GGCc--GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.