miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24844 3' -63.9 NC_005284.1 + 1001 0.67 0.271292
Target:  5'- -aGAUGCGCUCGCCGcagcagCCGGCaucaGCa -3'
miRNA:   3'- gcCUACGCGGGCGGCua----GGCCGc---CGg -5'
24844 3' -63.9 NC_005284.1 + 5388 0.67 0.2649
Target:  5'- uCGGAguucgGCuGCuuGCCcGUgCGGCGcGCCa -3'
miRNA:   3'- -GCCUa----CG-CGggCGGcUAgGCCGC-CGG- -5'
24844 3' -63.9 NC_005284.1 + 5690 0.66 0.322468
Target:  5'- aGGuUGa-CCCGCCgGAuucgcacguggcagcUCCGGCGGCg -3'
miRNA:   3'- gCCuACgcGGGCGG-CU---------------AGGCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 7010 0.76 0.062194
Target:  5'- ----gGCGCUCGCCGGgcugaCUGGCGGCCg -3'
miRNA:   3'- gccuaCGCGGGCGGCUa----GGCCGCCGG- -5'
24844 3' -63.9 NC_005284.1 + 7041 0.68 0.252483
Target:  5'- gCGGAcguacGCGCgCCGCCGuaccgCCGaGCacGGCCu -3'
miRNA:   3'- -GCCUa----CGCG-GGCGGCua---GGC-CG--CCGG- -5'
24844 3' -63.9 NC_005284.1 + 7711 0.73 0.109139
Target:  5'- aGcGGUGCGCCgaagcucgUGCCGccgCCGGCGGCg -3'
miRNA:   3'- gC-CUACGCGG--------GCGGCua-GGCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 8099 0.66 0.342085
Target:  5'- -cGAUGCaaCCG-CGGUCgCGGCGGCg -3'
miRNA:   3'- gcCUACGcgGGCgGCUAG-GCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 9734 0.69 0.218093
Target:  5'- aCGGAaGCgaaGCuuGCCGAagcgCgGGCGGUCg -3'
miRNA:   3'- -GCCUaCG---CGggCGGCUa---GgCCGCCGG- -5'
24844 3' -63.9 NC_005284.1 + 10169 0.67 0.297407
Target:  5'- -uGAUGCGCUCGguugguuCCGGcuugCUGGCGGCg -3'
miRNA:   3'- gcCUACGCGGGC-------GGCUa---GGCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 10670 0.67 0.277808
Target:  5'- -uGGUGCGCgCCGCgggcgCGAUCgacaCGGCgGGCCu -3'
miRNA:   3'- gcCUACGCG-GGCG-----GCUAG----GCCG-CCGG- -5'
24844 3' -63.9 NC_005284.1 + 14954 0.66 0.32692
Target:  5'- uGGcGUGaauaaCGCgCGCCG-UUCGGCGGCUu -3'
miRNA:   3'- gCC-UAC-----GCGgGCGGCuAGGCCGCCGG- -5'
24844 3' -63.9 NC_005284.1 + 16517 0.66 0.349856
Target:  5'- --aAUGCGUCUuguGCCGGgcgcgCUGGCGGCa -3'
miRNA:   3'- gccUACGCGGG---CGGCUa----GGCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 17493 0.66 0.319526
Target:  5'- cCGGGUcgguggucGCGUCgGCCGAuaugccguccgaUCCGGUcuaccuguacacGGCCg -3'
miRNA:   3'- -GCCUA--------CGCGGgCGGCU------------AGGCCG------------CCGG- -5'
24844 3' -63.9 NC_005284.1 + 18047 0.75 0.075134
Target:  5'- ----aGCGCUucgaCGCCGAUCCGGUGGCg -3'
miRNA:   3'- gccuaCGCGG----GCGGCUAGGCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 18784 0.7 0.173629
Target:  5'- uGGgcGCGCCUgGUCGAcacgUCCGGCaacgucgGGCCg -3'
miRNA:   3'- gCCuaCGCGGG-CGGCU----AGGCCG-------CCGG- -5'
24844 3' -63.9 NC_005284.1 + 18925 0.69 0.222984
Target:  5'- aCGGAgcUGCGCgCGCCGAUcgaccuaaucaccCCGccaUGGCCg -3'
miRNA:   3'- -GCCU--ACGCGgGCGGCUA-------------GGCc--GCCGG- -5'
24844 3' -63.9 NC_005284.1 + 19027 0.67 0.277808
Target:  5'- aGGcgGCGaUCGCCGAgggcgauaUGGCGGUCg -3'
miRNA:   3'- gCCuaCGCgGGCGGCUag------GCCGCCGG- -5'
24844 3' -63.9 NC_005284.1 + 20834 0.69 0.202449
Target:  5'- ----aGCGCCgGCCGAcgagCgGGCGGCg -3'
miRNA:   3'- gccuaCGCGGgCGGCUa---GgCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 21419 0.68 0.240548
Target:  5'- uCGGcaGCGCCgGCCGAcgaaCgGGCGGUg -3'
miRNA:   3'- -GCCuaCGCGGgCGGCUa---GgCCGCCGg -5'
24844 3' -63.9 NC_005284.1 + 21667 0.68 0.246456
Target:  5'- -cGAUGcCGCCgCGUCGG--CGGUGGCCg -3'
miRNA:   3'- gcCUAC-GCGG-GCGGCUagGCCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.