miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24845 5' -53.3 NC_005284.1 + 12762 0.66 0.828907
Target:  5'- cCGCUcggCCgGCacGCGCUCGCGaagauACGCu -3'
miRNA:   3'- aGCGAaa-GGaCG--UGCGAGUGU-----UGCGc -5'
24845 5' -53.3 NC_005284.1 + 31678 0.66 0.828907
Target:  5'- cCGCUgcgCCa--GCGCUCACGuaguucaaGCGCGu -3'
miRNA:   3'- aGCGAaa-GGacgUGCGAGUGU--------UGCGC- -5'
24845 5' -53.3 NC_005284.1 + 9904 0.66 0.819608
Target:  5'- gCGCg--CCgaaGCGuCGCUCGCGcucGCGCa -3'
miRNA:   3'- aGCGaaaGGa--CGU-GCGAGUGU---UGCGc -5'
24845 5' -53.3 NC_005284.1 + 44121 0.66 0.798449
Target:  5'- aUCGCgc-CCgcgGCGCGCaccaguuccucgCGCAGCGCu -3'
miRNA:   3'- -AGCGaaaGGa--CGUGCGa-----------GUGUUGCGc -5'
24845 5' -53.3 NC_005284.1 + 31797 0.66 0.790532
Target:  5'- gCGCggcUCCgGCugGCUCGgAugGgGg -3'
miRNA:   3'- aGCGaa-AGGaCGugCGAGUgUugCgC- -5'
24845 5' -53.3 NC_005284.1 + 50165 0.67 0.770276
Target:  5'- cCGCUgccgaCCgucgcagGCACGUUCAUGAUGCu -3'
miRNA:   3'- aGCGAaa---GGa------CGUGCGAGUGUUGCGc -5'
24845 5' -53.3 NC_005284.1 + 4460 0.67 0.770276
Target:  5'- cUGCUggaggCCgagcaaaaGCugGCUCGCGGCgGCGg -3'
miRNA:   3'- aGCGAaa---GGa-------CGugCGAGUGUUG-CGC- -5'
24845 5' -53.3 NC_005284.1 + 23449 0.67 0.770276
Target:  5'- gCGCgugUUCUGCGCgucGCUCGcCGACGUu -3'
miRNA:   3'- aGCGaa-AGGACGUG---CGAGU-GUUGCGc -5'
24845 5' -53.3 NC_005284.1 + 43500 0.67 0.759921
Target:  5'- cUCGCUUUCCaGCGaaugaacacCGCcccccuUCGCcGCGCGa -3'
miRNA:   3'- -AGCGAAAGGaCGU---------GCG------AGUGuUGCGC- -5'
24845 5' -53.3 NC_005284.1 + 27216 0.67 0.759921
Target:  5'- uUCGCUUUUUcuaUGUuCGCUUucuGCAGCGCa -3'
miRNA:   3'- -AGCGAAAGG---ACGuGCGAG---UGUUGCGc -5'
24845 5' -53.3 NC_005284.1 + 6979 0.68 0.717266
Target:  5'- gUCGUga-CCgcguacaugGCGCGCUCgACAugGCGc -3'
miRNA:   3'- -AGCGaaaGGa--------CGUGCGAG-UGUugCGC- -5'
24845 5' -53.3 NC_005284.1 + 45120 0.68 0.717266
Target:  5'- -gGCUUUCgC-GCAuCGCUCGCAugccCGCGa -3'
miRNA:   3'- agCGAAAG-GaCGU-GCGAGUGUu---GCGC- -5'
24845 5' -53.3 NC_005284.1 + 46062 0.68 0.717266
Target:  5'- uUCGCggaucgaaCUGCGCGC-CGCGucgaGCGCGc -3'
miRNA:   3'- -AGCGaaag----GACGUGCGaGUGU----UGCGC- -5'
24845 5' -53.3 NC_005284.1 + 53903 0.68 0.695368
Target:  5'- gUCGCUUgccuuggCCUGCGCGU--AgAGCGCu -3'
miRNA:   3'- -AGCGAAa------GGACGUGCGagUgUUGCGc -5'
24845 5' -53.3 NC_005284.1 + 32052 0.68 0.695368
Target:  5'- cUCGUaagCCUGCACGCUguacuucggcUugAGCGUGu -3'
miRNA:   3'- -AGCGaaaGGACGUGCGA----------GugUUGCGC- -5'
24845 5' -53.3 NC_005284.1 + 32234 0.68 0.684318
Target:  5'- -aGCUUUCC-GCGCGUgaauccuuUCGCcuGCGCGa -3'
miRNA:   3'- agCGAAAGGaCGUGCG--------AGUGu-UGCGC- -5'
24845 5' -53.3 NC_005284.1 + 37129 0.68 0.673217
Target:  5'- gUCGUcgUCCUGCACggGCUCgACAGCuuGCu -3'
miRNA:   3'- -AGCGaaAGGACGUG--CGAG-UGUUG--CGc -5'
24845 5' -53.3 NC_005284.1 + 33351 0.69 0.650905
Target:  5'- cCGCUcacaaaUUGCGCGUUCAgUAGCGCGg -3'
miRNA:   3'- aGCGAaag---GACGUGCGAGU-GUUGCGC- -5'
24845 5' -53.3 NC_005284.1 + 28479 0.69 0.639717
Target:  5'- aUGCUUUCCgcucGCACGCgcCGCAGUGCc -3'
miRNA:   3'- aGCGAAAGGa---CGUGCGa-GUGUUGCGc -5'
24845 5' -53.3 NC_005284.1 + 44725 0.69 0.625162
Target:  5'- cCGCgcgUUCC-GCuCGCUCACGagccugcguggcaaGCGCGa -3'
miRNA:   3'- aGCGa--AAGGaCGuGCGAGUGU--------------UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.