miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24865 3' -65.5 NC_005284.1 + 19003 0.67 0.208383
Target:  5'- aGCGCCgccuguuucagCUCuACGCCGCCgGCACg-- -3'
miRNA:   3'- aCGCGG-----------GAGcUGCGGCGGgCGUGggu -5'
24865 3' -65.5 NC_005284.1 + 20764 0.69 0.160565
Target:  5'- uUGCGCuCCUCGAcCGCCucgaacgcGCagaaucggcccucgCCGCACCCc -3'
miRNA:   3'- -ACGCG-GGAGCU-GCGG--------CG--------------GGCGUGGGu -5'
24865 3' -65.5 NC_005284.1 + 21626 0.68 0.195261
Target:  5'- cGCGCCgcgCUCGACGCCgagcagcgugcgaucGCCgCGCACg-- -3'
miRNA:   3'- aCGCGG---GAGCUGCGG---------------CGG-GCGUGggu -5'
24865 3' -65.5 NC_005284.1 + 21905 0.69 0.166006
Target:  5'- cGCGUuuUCGGCGUCGCCgGCGacgaUCAg -3'
miRNA:   3'- aCGCGggAGCUGCGGCGGgCGUg---GGU- -5'
24865 3' -65.5 NC_005284.1 + 21964 0.75 0.057379
Target:  5'- uUGUGCuCCUugccguaacCGACGCCGcCCCGCaACCCGc -3'
miRNA:   3'- -ACGCG-GGA---------GCUGCGGC-GGGCG-UGGGU- -5'
24865 3' -65.5 NC_005284.1 + 23168 1.08 0.000138
Target:  5'- aUGCGCCCUCGACGCCGCCCGCACCCAa -3'
miRNA:   3'- -ACGCGGGAGCUGCGGCGGGCGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 23354 0.71 0.112342
Target:  5'- gGCGCgCCgcagCGGCGCacguCGCCCGCgaacuggcgcaaGCCCAu -3'
miRNA:   3'- aCGCG-GGa---GCUGCG----GCGGGCG------------UGGGU- -5'
24865 3' -65.5 NC_005284.1 + 23870 0.69 0.166006
Target:  5'- aGCGgCCaCGGCGcCCGCCCGaugcauCCCGa -3'
miRNA:   3'- aCGCgGGaGCUGC-GGCGGGCgu----GGGU- -5'
24865 3' -65.5 NC_005284.1 + 24738 0.7 0.135004
Target:  5'- gUGCGUCUUCGGC-CCGCUa-CACCCGa -3'
miRNA:   3'- -ACGCGGGAGCUGcGGCGGgcGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 26276 0.69 0.161806
Target:  5'- gGCGCUCcaaauCGCCGCCgCGCACaCCGa -3'
miRNA:   3'- aCGCGGGagcu-GCGGCGG-GCGUG-GGU- -5'
24865 3' -65.5 NC_005284.1 + 27112 0.67 0.213629
Target:  5'- gGCGaCCCgcgCGccACGCCgGCCCGUauagcggcgauuGCCCGa -3'
miRNA:   3'- aCGC-GGGa--GC--UGCGG-CGGGCG------------UGGGU- -5'
24865 3' -65.5 NC_005284.1 + 27794 0.69 0.166006
Target:  5'- cGCGCCCUUuucggacgaGugGCgUGCCCGCgaagaGCUCAa -3'
miRNA:   3'- aCGCGGGAG---------CugCG-GCGGGCG-----UGGGU- -5'
24865 3' -65.5 NC_005284.1 + 28381 0.66 0.253592
Target:  5'- cGuCGCCCaccucgaagCGGCGCaGCCaCGCugCCGu -3'
miRNA:   3'- aC-GCGGGa--------GCUGCGgCGG-GCGugGGU- -5'
24865 3' -65.5 NC_005284.1 + 30929 0.68 0.193307
Target:  5'- gGCGCCgUgGcgcuuuCGCCGCCgGCgaucACCCAa -3'
miRNA:   3'- aCGCGGgAgCu-----GCGGCGGgCG----UGGGU- -5'
24865 3' -65.5 NC_005284.1 + 31418 0.66 0.253592
Target:  5'- uUGCGCCaguUCGcgggcgacguGCGCCGCUgcggCGCGCCgGg -3'
miRNA:   3'- -ACGCGGg--AGC----------UGCGGCGG----GCGUGGgU- -5'
24865 3' -65.5 NC_005284.1 + 31921 0.71 0.10655
Target:  5'- cGCGgCgCUCGACGCCuuCCCGcCGCCUAu -3'
miRNA:   3'- aCGCgG-GAGCUGCGGc-GGGC-GUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 32034 0.66 0.266088
Target:  5'- cGCGCCCcuugaUCGACcgcaGCCGCUCG-GCCa- -3'
miRNA:   3'- aCGCGGG-----AGCUG----CGGCGGGCgUGGgu -5'
24865 3' -65.5 NC_005284.1 + 33261 0.66 0.259779
Target:  5'- gUGCGCCgaucaggugCUCGACGCaagCGCCgGcCGCCa- -3'
miRNA:   3'- -ACGCGG---------GAGCUGCG---GCGGgC-GUGGgu -5'
24865 3' -65.5 NC_005284.1 + 33465 0.7 0.131526
Target:  5'- cGCGCCC-CGccaGUCGCCCGCAUUgAa -3'
miRNA:   3'- aCGCGGGaGCug-CGGCGGGCGUGGgU- -5'
24865 3' -65.5 NC_005284.1 + 33475 0.68 0.174699
Target:  5'- cGCGCCgUCGGC-CgGCgCUGCugCCGa -3'
miRNA:   3'- aCGCGGgAGCUGcGgCG-GGCGugGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.