miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24865 3' -65.5 NC_005284.1 + 467 0.68 0.179196
Target:  5'- aGCGCCUggUCGGCGCaaaGCCgaaaaCACCCGa -3'
miRNA:   3'- aCGCGGG--AGCUGCGg--CGGgc---GUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 1112 0.71 0.102937
Target:  5'- cGUGCCCgUCGACgacuugaucgaguuGCCGCCUGCACa-- -3'
miRNA:   3'- aCGCGGG-AGCUG--------------CGGCGGGCGUGggu -5'
24865 3' -65.5 NC_005284.1 + 3942 0.66 0.253592
Target:  5'- -aUGCCUUCGuccggaaaACGCCcgGCCC-CACCCAa -3'
miRNA:   3'- acGCGGGAGC--------UGCGG--CGGGcGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 5188 0.7 0.138567
Target:  5'- -aCGCCaCUUGACGCCGaagaCCGCugaucaGCCCGa -3'
miRNA:   3'- acGCGG-GAGCUGCGGCg---GGCG------UGGGU- -5'
24865 3' -65.5 NC_005284.1 + 5399 0.69 0.142215
Target:  5'- cUGCuuGCCCgugCGGCGCgccaGCUCGCGCUCGg -3'
miRNA:   3'- -ACG--CGGGa--GCUGCGg---CGGGCGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 5694 0.68 0.183795
Target:  5'- cGCGCUgCUCGAUGCCGaguugcuuaCCGCGgUCAg -3'
miRNA:   3'- aCGCGG-GAGCUGCGGCg--------GGCGUgGGU- -5'
24865 3' -65.5 NC_005284.1 + 6155 0.66 0.235758
Target:  5'- uUGCaCCCUuuaCGuCGUCGUuuGCACCCu -3'
miRNA:   3'- -ACGcGGGA---GCuGCGGCGggCGUGGGu -5'
24865 3' -65.5 NC_005284.1 + 6451 0.66 0.253592
Target:  5'- aGCGCgagaaucaUCUCGcCGCCGCCUuccggauaGCGCUCGa -3'
miRNA:   3'- aCGCG--------GGAGCuGCGGCGGG--------CGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 6949 0.7 0.135004
Target:  5'- gUGCGCUUUCcGCGUCGUCaaugccgaGCACCCAu -3'
miRNA:   3'- -ACGCGGGAGcUGCGGCGGg-------CGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 6984 0.66 0.266088
Target:  5'- cGCGCgCCgccaaGCGCuCGCCCGuCGCCUc -3'
miRNA:   3'- aCGCG-GGagc--UGCG-GCGGGC-GUGGGu -5'
24865 3' -65.5 NC_005284.1 + 7715 0.69 0.166006
Target:  5'- gUGCGCCgaagCUCGugcCGCCGCCgGCGgcguaacucCCCGa -3'
miRNA:   3'- -ACGCGG----GAGCu--GCGGCGGgCGU---------GGGU- -5'
24865 3' -65.5 NC_005284.1 + 8715 0.71 0.115347
Target:  5'- cGCGCgCUCGACGCgGCgCGCAguucgaUCCGc -3'
miRNA:   3'- aCGCGgGAGCUGCGgCGgGCGU------GGGU- -5'
24865 3' -65.5 NC_005284.1 + 8744 0.69 0.153694
Target:  5'- cGCuuGCCgUCGAgGCCuGCUCGaCGCCCGg -3'
miRNA:   3'- aCG--CGGgAGCUgCGG-CGGGC-GUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 9141 0.66 0.241583
Target:  5'- cGCGCaCCgaCGAgcCGCCaGCCUGC-CCCGc -3'
miRNA:   3'- aCGCG-GGa-GCU--GCGG-CGGGCGuGGGU- -5'
24865 3' -65.5 NC_005284.1 + 9903 0.69 0.142215
Target:  5'- aGCGCgCCgaaGCGUCGCUCGCGCUCGc -3'
miRNA:   3'- aCGCG-GGagcUGCGGCGGGCGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 12799 0.71 0.11175
Target:  5'- gGCGCggagucguucuaCUgGACGCCGCCgcuuCGCGCCCGc -3'
miRNA:   3'- aCGCGg-----------GAgCUGCGGCGG----GCGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 12946 0.67 0.229488
Target:  5'- aGUGCUgCUCGGCGCCccacuuuGUCCGCAuUCCGc -3'
miRNA:   3'- aCGCGG-GAGCUGCGG-------CGGGCGU-GGGU- -5'
24865 3' -65.5 NC_005284.1 + 13186 0.66 0.247528
Target:  5'- -uCGCaCUCGGCGCgGCCuCGCGCgCGu -3'
miRNA:   3'- acGCGgGAGCUGCGgCGG-GCGUGgGU- -5'
24865 3' -65.5 NC_005284.1 + 14632 0.69 0.145952
Target:  5'- cGCGCuaCCUCGACGCCgugaauuuuccgGCCgGCAaUCCGa -3'
miRNA:   3'- aCGCG--GGAGCUGCGG------------CGGgCGU-GGGU- -5'
24865 3' -65.5 NC_005284.1 + 15307 0.69 0.15409
Target:  5'- cGCGCCCgcuacaggagaaagaCGAUgGCacaGCaCCGCACCCAc -3'
miRNA:   3'- aCGCGGGa--------------GCUG-CGg--CG-GGCGUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.